BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0479.0015.p (371 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mll0503 [R] COG4603 ABC-type uncharacterized transport system, p... 229 6e-60 SMc00243 [R] COG4603 ABC-type uncharacterized transport system, ... 222 6e-58 mll4175 [R] COG4603 ABC-type uncharacterized transport system, p... 213 6e-55 SMa1513 [R] COG4603 ABC-type uncharacterized transport system, p... 206 4e-53 AGc3295 [R] COG4603 ABC-type uncharacterized transport system, p... 206 6e-53 >mll0503 [R] COG4603 ABC-type uncharacterized transport system, permease component Length = 375 Score = 229 bits (583), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 138/351 (39%), Positives = 208/351 (59%), Gaps = 8/351 (2%) Query: 25 MRLEYDASRTRSPWWS---PXXXXXXXXXXCAVFIAANGMSPVAVYDKMFRGAFGTSYGI 81 MRLE RS +S P AV A G++P+ + F + + Sbjct: 1 MRLELVKRPQRSALFSALSPFIAFALTIIAGAVLFALLGVNPLTAFRIYFIEPISQVWQL 60 Query: 82 TETMVKAIPLLLCGLGIAVAYRISVWNIGAEGQLTVGAMAATAVTIYFPGLSSFWSIALM 141 E +KA PL+L +G++V Y+ ++WNIGAEGQ GA+ +A+ + FP + LM Sbjct: 61 HELAIKAAPLILIAVGLSVCYKANIWNIGAEGQFIFGAIFGSAIPVLFPQFEGPLVLPLM 120 Query: 142 LVFGTAAGALWGLMTAIPRTHFGVNELITSLMLNYVALLALDYVVFGPWKDPKGFNFPGS 201 L+ G GA + + A +T F NE++TSLML YVA L LD++V GPW+DP+G FP + Sbjct: 121 LLLGMVGGAAYAAIPAFLKTRFNTNEILTSLMLVYVAQLFLDWLVRGPWRDPQGHGFPQT 180 Query: 202 PMFTAAQSLPVL--GATRLHIGLIFGLV-AVAIYYLMIRFTRWGYELRLIGANPTAARYA 258 F + LP L A R + G +F LV AV I+ LM R + G+E+R++G++P A R+A Sbjct: 181 IQFGDSAVLPELMPDAGRANWGFVFALVAAVLIWILMGRMLK-GFEVRVLGSSPRAGRFA 239 Query: 259 GIHIKKHIMIVMLISGGLAGIAGMAEVSGVTHKLMQGISPGYGYTAIIVAWLAKLNPLGL 318 G + + + L+SG LAG+AG++EVSG +L ISPGYG+TAIIVA+L +LNPLG+ Sbjct: 240 GFGLSRMVFFAFLLSGALAGLAGISEVSGAIGQLQPVISPGYGFTAIIVAFLGRLNPLGI 299 Query: 319 IVTSVLFGGLIVGGYSVQT-IGLPSSISEMLQGAILFFLIAGDMIHRFRIR 368 I ++ +GG +VQ+ +G+ ++ + QG +LFF++ D + +RIR Sbjct: 300 IAAGLVLALTYLGGEAVQSALGISDKVARVFQGMLLFFVLGCDTLIHYRIR 350 >SMc00243 [R] COG4603 ABC-type uncharacterized transport system, permease component Length = 364 Score = 222 bits (566), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 133/349 (38%), Positives = 205/349 (58%), Gaps = 5/349 (1%) Query: 25 MRLEYDASRTRSPWWS---PXXXXXXXXXXCAVFIAANGMSPVAVYDKMFRGAFGTSYGI 81 MR+E + S +S P V A G +PV F + + Sbjct: 1 MRIELEKRAKASTLFSILSPFIAFALTIVFGGVMFALLGKNPVTALYSFFVEPLSEVWSL 60 Query: 82 TETMVKAIPLLLCGLGIAVAYRISVWNIGAEGQLTVGAMAATAVTIYFPGLSSFWSIALM 141 E +KA PL+L G+G++V +R + WNIGAEGQ +GA+A +A+ + F S + LM Sbjct: 61 HELAIKAAPLILIGVGLSVCFRSNNWNIGAEGQFIMGAIAGSALPVLFYDWQSPLILPLM 120 Query: 142 LVFGTAAGALWGLMTAIPRTHFGVNELITSLMLNYVALLALDYVVFGPWKDPKGFNFPGS 201 ++ G GAL+ + A + H NE++TSLML YVA L LD++V GPW++P+G NFP + Sbjct: 121 MLLGMLGGALFAAIPAFLKAHMNTNEILTSLMLVYVAQLFLDWLVRGPWRNPQGMNFPET 180 Query: 202 PMFTAAQSLP-VLGATRLHIGLIFGLVAVAIYYLMIRFTRWGYELRLIGANPTAARYAGI 260 F A LP +L + R H G F ++A + + M+R+T G+E+ ++G + A R+AG Sbjct: 181 RTFGADAILPEMLASGRTHWGFAFAIIAAVLVWFMMRYTLKGFEITVLGQSERAGRFAGF 240 Query: 261 HIKKHIMIVMLISGGLAGIAGMAEVSGVTHKLMQGISPGYGYTAIIVAWLAKLNPLGLIV 320 ++ I ML SG LAG+AG++EVSG +L ISPGYG+TAIIVA+L +LNPLG++ Sbjct: 241 SSRRMIWFSMLFSGALAGLAGISEVSGAMQQLRPVISPGYGFTAIIVAFLGRLNPLGIVA 300 Query: 321 TSVLFGGLIVGGYSVQ-TIGLPSSISEMLQGAILFFLIAGDMIHRFRIR 368 ++ +GG + Q +IG+ ++ + QG +LFF+++ D + +RIR Sbjct: 301 AGLVLALTYLGGEAAQLSIGVSEKVTRVFQGLLLFFVLSCDALIHYRIR 349 >mll4175 [R] COG4603 ABC-type uncharacterized transport system, permease component Length = 351 Score = 213 bits (541), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 139/351 (39%), Positives = 209/351 (59%), Gaps = 14/351 (3%) Query: 26 RLEYDASRTRSPWWS----PXXXXXXXXXXCAVFIAANGMSPVAVYDKMFRGAFGTSYGI 81 RLE RT +P W P C+ IA G + Y MF + G SY I Sbjct: 3 RLEV---RTSTPTWFNLALPLVAIAATLVLCSGLIALAGAGVLESYGVMFTASLGDSYAI 59 Query: 82 TETMVKAIPLLLCGLGIAVAYRISVWNIGAEGQLTVGAMAATAV-TIYFPGLSSFWSIAL 140 TET+V+A P++ GL +AVA+R WNIGAEGQL GA+A+ V I PG ++ L Sbjct: 60 TETLVRAAPMIFTGLAVAVAFRAKFWNIGAEGQLLAGAVASCFVGAIPMPGP---LAMLL 116 Query: 141 MLVFGTAAGALWGLMTAIPRTHFGVNELITSLMLNYVALLALDYVVFGPWKDPKGFNFPG 200 M + G AAGA+ L+ A R F V+++++SL+LN V AL ++ GPWKD +P Sbjct: 117 MAIAGAAAGAVVALVPATLRVKFKVDDVVSSLLLNSVIYYALMALIEGPWKDSFS-GYPI 175 Query: 201 SPMFTAAQSLPVL-GATRLHIGLIFGLVAVAIYYLMIRFTRWGYELRLIGANPTAARYAG 259 SP + + PVL TRLH+G+I L+A + + +I T G+ +R+ G +P AARY G Sbjct: 176 SPPIEDSANFPVLIEGTRLHLGVIVALIAAPLIWFLIARTTLGFRIRVTGESPEAARYGG 235 Query: 260 IHIKKHIMIVMLISGGLAGIAGMAEVSGVTHKLMQGISPGYGYTAIIVAWLAKLNPLGLI 319 IH+++ ++ L+SG LAG+AG+ EV GV ++M ISPGYGY+ I+VA LA+LNPLG++ Sbjct: 236 IHVERVLLSTALMSGALAGLAGVGEVGGVHFQVMSDISPGYGYSGIVVAMLARLNPLGVV 295 Query: 320 VTSVLFGGLIVGGYSV-QTIGLPSSISEMLQGAILFFLIAGDMIHRFRIRR 369 ++ ++ G ++ + G+P+ +S+++QG L ++ + +RIRR Sbjct: 296 PAAIFLAAVMTGAEAMSRATGVPAFLSDVIQGTALLAMLVALLFTAYRIRR 346 >SMa1513 [R] COG4603 ABC-type uncharacterized transport system, permease component Length = 340 Score = 206 bits (525), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 129/318 (40%), Positives = 192/318 (60%), Gaps = 2/318 (0%) Query: 53 AVFIAANGMSPVAVYDKMFRGAFGTSYGITETMVKAIPLLLCGLGIAVAYRISVWNIGAE 112 +V AA G P+A F ++ G++E ++KA PL+L G+AV +R ++WNIGAE Sbjct: 18 SVLFAALGYDPLATLHAFFVAPINSTNGLSEWLLKASPLILIACGLAVGFRANIWNIGAE 77 Query: 113 GQLTVGAMAATAVTIYFPGLSSFWSIALMLVFGTAAGALWGLMTAIPRTHFGVNELITSL 172 GQL +GA+AA V +++P S I LM + G AG W + A R NE++ +L Sbjct: 78 GQLIIGAIAACGVGLFYPDPESPLLIPLMFLAGAGAGMAWAAIPAFLRARMNTNEILVTL 137 Query: 173 MLNYVALLALDYVVFGPWKDPKGFNFPGSPMFTAAQSL-PVLGATRLHIGLIFGLVAVAI 231 ML Y+A L L ++V GPW+DP GFN+P + + AA P + RL+ + VAV + Sbjct: 138 MLTYIATLLLSFLVHGPWRDPAGFNYPQTALLPAAAMFEPFDYSYRLNPSIFITAVAVVM 197 Query: 232 YYLMIRFTRWGYELRLIGANPTAARYAGIHIKKHIMIVMLISGGLAGIAGMAEVSGVTHK 291 +L + GY++ + GA P AARYAG + +L G AGIAGMAEV+G + Sbjct: 198 MWLFTDRSFLGYKMSVSGAAPLAARYAGFRESSAVWTGLLAGGAAAGIAGMAEVAGPLGQ 257 Query: 292 LMQGISPGYGYTAIIVAWLAKLNPLGLIVTSVLFGGLIVGGYSVQ-TIGLPSSISEMLQG 350 L ISPGYG+ AIIVA++ +LN G+++ +L L +GG +VQ T+GLP++++ + QG Sbjct: 258 LSPQISPGYGFAAIIVAFIGRLNAFGIVLGGLLMSLLFLGGETVQMTLGLPAALTRIFQG 317 Query: 351 AILFFLIAGDMIHRFRIR 368 +LFFL+A D +R+R Sbjct: 318 ILLFFLLAADFFIYYRLR 335 >AGc3295 [R] COG4603 ABC-type uncharacterized transport system, permease component Length = 289 Score = 206 bits (523), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 0/318 (0%), Positives = 0/318 (0%), Gaps = 2/318 (0%) Query: 53 AVFIAANGMSPVAVYDKMFRGAFGTSYGITETMVKAIPLLLCGLGIAVAYRISVWNIGAE 112 + ++ G++ ++ F + + + + Sbjct: 32 SYWLKKFGIAGSYTAVEVSPDDFPKFIATLKEGKPGAAVGGNATIPHKEAAYRLADHPDA 91 Query: 113 GQLTVGAMAATAVTIYFPGLSSFWSIALMLVFGTAAGALWGLMTAIPRTHFGVNELITSL 172 +GA + ++ + A+ G + + Sbjct: 92 LAEELGAANTIWMEEGKLHATNTDGYGFVSNLDERHPGWDKTQRAVVFGAGGASRAVIQS 151 Query: 173 MLNYVALLALDYVVFGPWKDPKGFNFPGSPMFTAAQSLP-VLGATRLHIGLIFGLVAVAI 231 + + F +L V+ L + + Sbjct: 152 LRDRDVAEIHVVNRTVERARELADRFGPRVFSHPQAALQEVMHGAGLFVNTTSLGMNGTE 211 Query: 232 YYLMIRFTRWGYELRLIGANPTAARYAGIHIKKHIMIVMLISGGLAGIAGMAEVSGVTHK 291 + + ++ + + G L A Sbjct: 212 APHLDFSHLAANAVVTDIVYVPLKTPILNMAQEQGIATVDGLGMLLHQAKPGFRRWFGRI 271 Query: 292 LMQGISPGYGYTAIIVAWLAKLNPLGLIVTSVLFGGLIVGGYSVQ-TIGLPSSISEMLQG 350 Sbjct: 272 331 Query: 351 AILFFLIAGDMIHRFRIR 368 Sbjct: 332 349 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.326 0.140 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 26,479,132 Number of extensions: 1108860 Number of successful extensions: 3653 Number of sequences better than 1.0e-05: 94 Number of HSP's gapped: 3563 Number of HSP's successfully gapped: 94 Length of query: 371 Length of database: 38,378,431 Length adjustment: 108 Effective length of query: 263 Effective length of database: 25,922,359 Effective search space: 6817580417 Effective search space used: 6817580417 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 116 (49.3 bits)