BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0479.0014.p (510 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGc202 [R] COG3845 ABC-type uncharacterized transport systems, A... 368 e-101 AGc2026 [IQR] COG1028 Dehydrogenases with different specificitie... 368 e-101 AGc2023 [C] COG0667 Predicted oxidoreductases (related to aryl-a... 368 e-101 mlr3154 [R] COG3845 ABC-type uncharacterized transport systems, ... 361 1e-99 SMc04127 [R] COG3845 ABC-type uncharacterized transport systems,... 358 1e-98 >AGc202 [R] COG3845 ABC-type uncharacterized transport systems, ATPase components Length = 218 Score = 368 bits (944), Expect = e-101, Method: Compositional matrix adjust. Identities = 0/502 (0%), Positives = 0/502 (0%), Gaps = 6/502 (1%) Query: 3 DPSVEMRGIVKKFGSVTASNQVDFSANAGEIHALLGENGAGKSTVMSMLSGVYRADEGEI 62 S++ I+ + + I A + E + S A E Sbjct: 17 RQSMKQELILASSSASRQMLMRNAGLTFSAIPADIDERALDEQLERDGASPEEVALELAR 76 Query: 63 LLHGQPARIRSPKDAALLGVGMVFQNFRLVQSLTAAENIVLGEKSS--FWRGSKWIKNKH 120 + + M + AE S R + Sbjct: 77 AKALAVSALHPEALVLGCDQTMALGTRVYHKPKNMAEAATHLLSLSGKVHRLNSAAV--- 133 Query: 121 REIEALAEQFGLMFPVDRPVWQLSVGEQQRVEIVKTLYRGAEIIILDEPTSVLTPGEAEQ 180 + + + ++ V + E + E Sbjct: 134 LVHNGKVVWQTVSSAELAVRTLSAEFVSRHLQRVGEKALSSVGAYQLEREGIQLFTSIEG 193 Query: 181 LFATLQVMKQAGKTVIMTTHKMKEVMASSDRISVMRKGKMIATLATSGTDELELARLMVG 240 Sbjct: 194 253 Query: 241 XXXXXXXXXXXAAPGKPLLVVSNLEVTADHGRKALDGMSLQVCEGEIXXXXXXXXNGQKE 300 Sbjct: 254 313 Query: 301 LAEVLTGLRTWKNGDIIFDGGPVKSASVRGAIDSGISHVPENRMKSGLAGRLGSVDNLLF 360 Sbjct: 314 373 Query: 361 KSYRSSGHSKFGFLKAAKNRSWSQELVERFNVKTPALDTPVQQLSGGNQQKLLFAREVSH 420 Sbjct: 374 433 Query: 421 QPKLMVAVHPTQGLDVGATAGVHELLMELRSRGSGVXXXXXXXXXXXXXXXRILVIYNGS 480 Sbjct: 434 493 Query: 481 IIGESDHEHADREHIGLLMAGI 502 Sbjct: 494 - 514 >AGc2026 [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Length = 516 Score = 368 bits (944), Expect = e-101, Method: Compositional matrix adjust. Identities = 200/502 (39%), Positives = 293/502 (58%), Gaps = 6/502 (1%) Query: 3 DPSVEMRGIVKKFGSVTASNQVDFSANAGEIHALLGENGAGKSTVMSMLSGVYRADEGEI 62 DP++E+ GI KKFG+V A+ ++ S G IH ++GENGAGKST+MS+L G Y+AD GEI Sbjct: 17 DPAIELMGIDKKFGAVHANKNINLSVAKGTIHGIIGENGAGKSTLMSILYGFYQADAGEI 76 Query: 63 LLHGQPARIRSPKDAALLGVGMVFQNFRLVQSLTAAENIVLGEKSS--FWRGSKWIKNKH 120 ++G+P IR + A G+GMV Q+F LV++ T EN++LG + RG + Sbjct: 77 RVNGKPVTIRDSQAAISAGIGMVHQHFMLVENFTVLENVMLGAEGGALLARGRAGAR--- 133 Query: 121 REIEALAEQFGLMFPVDRPVWQLSVGEQQRVEIVKTLYRGAEIIILDEPTSVLTPGEAEQ 180 RE++ L + +GL D + +L VG QQRVEI+K +YRGAEI+ILDEPT VLTP EA+ Sbjct: 134 RELKRLEDDYGLEVDPDAVIEELPVGLQQRVEILKAMYRGAEILILDEPTGVLTPAEADH 193 Query: 181 LFATLQVMKQAGKTVIMTTHKMKEVMASSDRISVMRKGKMIATLATSGTDELELARLMVG 240 LF L V+++ GKT+I+ THK++E+MA +D +SVMR+G+M+AT TS T ELA LMVG Sbjct: 194 LFKILGVLREQGKTIILITHKLREIMAITDSVSVMRRGEMVATRKTSETSVEELAELMVG 253 Query: 241 XXXXXXXXXXXAAPGKPLLVVSNLEVTADHGRKALDGMSLQVCEGEIXXXXXXXXNGQKE 300 PG LL + NL V G +D +SL V GEI NGQ E Sbjct: 254 RRVLLRVEKGETTPGDVLLSIRNLTVKDSRGVTMVDDVSLDVRAGEIVGIAGVAGNGQSE 313 Query: 301 LAEVLTGLRTWKNGDIIFDGGPVKSASVRGAIDSGISHVPENRMKSGLAGRLGSVDNLLF 360 L E + G+R +G+I DG V G++H+PE+R GL + +N + Sbjct: 314 LLEAIAGIRKPYSGEIWVDGQKVDRPDPAILRKLGLAHIPEDRHHMGLVLKFEEYENSIL 373 Query: 361 KSYRSSGHSKFGFLKAAKNRSWSQELVERFNVKTPALDTPVQQLSGGNQQKLLFAREVSH 420 + + K FL R + E +E+++++ P SGGNQQK++ ARE+ Sbjct: 374 GYHHDERYGKGPFLNPEAIRKDAVEKIEKYDIRPPNPQLKTANFSGGNQQKIVVAREIER 433 Query: 421 QPKLMVAVHPTQGLDVGATAGVHELLMELRSRGSGVXXXXXXXXXXXXXXXRILVIYNGS 480 PK+++ PT+G+D+GA +H ++E+R G + RI+V++ G Sbjct: 434 DPKMLIIGQPTRGVDIGAIEFIHRRIIEMRDAGKAILLVSVELDEIRSLSDRIMVMFAGR 493 Query: 481 IIGESDHEHADREHIGLLMAGI 502 ++GE E A+ + +GL+MAGI Sbjct: 494 VVGEKTAE-AEEQTLGLMMAGI 514 >AGc2023 [C] COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Length = 346 Score = 368 bits (944), Expect = e-101, Method: Compositional matrix adjust. Identities = 0/502 (0%), Positives = 0/502 (0%), Gaps = 6/502 (1%) Query: 3 DPSVEMRGIVKKFGSVTASNQVDFSANAGEIHALLGENGAGKSTVMSMLSGVYRADEGEI 62 G A + I + + + Sbjct: 17 GLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYVGNWLAKH 76 Query: 63 LLHGQPARIRSPKDAALLGVGMVFQNFRLVQSLTAAENIVLGEKSS--FWRGSKWIKNKH 120 + + + + L + ++ + + Sbjct: 77 GSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTDYLDLYQVHW--- 133 Query: 121 REIEALAEQFGLMFPVDRPVWQLSVGEQQRVEIVKTLYRGAEIIILDEPTSVLTPGEAEQ 180 + D + + + + I + +E + Sbjct: 134 PQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNETAFGVMRYLHLA 193 Query: 181 LFATLQVMKQAGKTVIMTTHKMKEVMASSDRISVMRKGKMIATLATSGTDELELARLMVG 240 L + + + +A + + + T + G Sbjct: 194 DKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLGFGTLTGKYLNGAKPAG 253 Query: 241 XXXXXXXXXXXAAPGKPLLVVSNLEVTADHGRKALDGMSLQVCEGEIXXXXXXXXNGQKE 300 + + V+ A M+L + + Sbjct: 254 ARNTLFSRFTRYSGEQTQKAVAAYVDIARRHGLDPAQMALAFVRRQPFVASTLLGATTMD 313 Query: 301 LAEVLTGLRTWKNGDIIFDGGPVKSASVRGAIDSGISHVPENRMKSGLAGRLGSVDNLLF 360 Sbjct: 314 373 Query: 361 KSYRSSGHSKFGFLKAAKNRSWSQELVERFNVKTPALDTPVQQLSGGNQQKLLFAREVSH 420 Sbjct: 374 433 Query: 421 QPKLMVAVHPTQGLDVGATAGVHELLMELRSRGSGVXXXXXXXXXXXXXXXRILVIYNGS 480 Sbjct: 434 493 Query: 481 IIGESDHEHADREHIGLLMAGI 502 Sbjct: 494 - 514 >mlr3154 [R] COG3845 ABC-type uncharacterized transport systems, ATPase components Length = 510 Score = 361 bits (927), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 208/513 (40%), Positives = 301/513 (58%), Gaps = 9/513 (1%) Query: 1 MQDPSVEMRGIVKKFGSVTASNQVDFSANAGEIHALLGENGAGKSTVMSMLSGVYRADEG 60 M ++E+ GI K FG+V A+ ++ G IH ++GENGAGKST+MS+L G Y+AD G Sbjct: 1 MAQAAIELIGINKSFGAVRANRDINLEIARGTIHGIVGENGAGKSTLMSILYGFYQADSG 60 Query: 61 EILLHGQPARIRSPKDAALLGVGMVFQNFRLVQSLTAAENIVLGEKSSFWRGSKWIKNKH 120 EI + G+PA I++P DA LG+GMV Q+F LV + + ENI+LG +S S K + Sbjct: 61 EIRVGGKPASIKTPNDAIALGIGMVHQHFMLVDNFSVLENIILGAESDALLKSSIAKARS 120 Query: 121 REIEALAEQFGLMFPVDRPVWQLSVGEQQRVEIVKTLYRGAEIIILDEPTSVLTPGEAEQ 180 E+E L ++GL D + +L VG QQRVEI+K LYRGAEI+ILDEPT VLTP EA+ Sbjct: 121 -ELERLEREYGLEVDPDAIIEELPVGLQQRVEILKALYRGAEILILDEPTGVLTPAEADH 179 Query: 181 LFATLQVMKQAGKTVIMTTHKMKEVMASSDRISVMRKGKMIATLATSGTDELELARLMVG 240 LF L+ +K+ GKTV++ THK++E+MA +D +SVMR+G M+AT TS T ELA LMVG Sbjct: 180 LFRILKQLKEQGKTVVLITHKLREIMAITDNVSVMRQGTMVATRETSKTTVGELAELMVG 239 Query: 241 XXXXXXXXXXXAAPGKPLLVVSNLEVTADHGRKALDGMSLQVCEGEIXXXXXXXXNGQKE 300 A G L V NL V G +D +S + GEI NGQ E Sbjct: 240 RRVLLRVEKGEAEAGAVKLAVKNLTVKDSRGVTMVDDISFDLRAGEIVGIAGVAGNGQSE 299 Query: 301 LAEVLTGLRTWKNGDIIFDGGPVK--SASVRGAI-DSGISHVPENRMKSGLAGRLGSVDN 357 L E ++G+R +G ++ DG P+ A+ G + D G++HVPE+R GL +N Sbjct: 300 LLEAISGIRHAVSGSVMLDGKPIDLTGAADPGELRDRGLAHVPEDRHHVGLVLAFEENEN 359 Query: 358 LLFKSYRSSGHSKFGFLKAAKNRSWSQELVERFNVK--TPALDTPVQQLSGGNQQKLLFA 415 + + + K FL + +++ +E+++++ P L T SGGNQQK++ A Sbjct: 360 SILGYHDDPRYLKGPFLNVDAIMADAKDKIEKYDIRPGNPRLKTA--NFSGGNQQKIVLA 417 Query: 416 REVSHQPKLMVAVHPTQGLDVGATAGVHELLMELRSRGSGVXXXXXXXXXXXXXXXRILV 475 RE+ P +++ PT+G+DVGA +H+ L+ +R +G V RILV Sbjct: 418 REMEQDPGVLIVGQPTRGVDVGAIEFIHKRLIAMRDQGKAVLVVSVELDEIRSLSDRILV 477 Query: 476 IYNGSIIGESDHEHADREHIGLLMAGIRSKEAS 508 ++ G I+GE E + E +GLLMAG+ +EA+ Sbjct: 478 MFAGRIVGERGPEATEGE-LGLLMAGVERQEAA 509 >SMc04127 [R] COG3845 ABC-type uncharacterized transport systems, ATPase components Length = 511 Score = 358 bits (919), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 199/515 (38%), Positives = 296/515 (57%), Gaps = 11/515 (2%) Query: 1 MQDPSVEMRGIVKKFGSVTASNQVDFSANAGEIHALLGENGAGKSTVMSMLSGVYRADEG 60 M + ++E+RGI K FG V A+ ++ G IH ++GENGAGKST+MS+L G Y+AD G Sbjct: 1 MNNIAIELRGIDKSFGLVHANRNINLRVRKGTIHGIIGENGAGKSTLMSILYGFYQADNG 60 Query: 61 EILLHGQPARIRSPKDAALLGVGMVFQNFRLVQSLTAAENIVLGEKSSFWRGSKWIKNKH 120 EIL+ G+P IR P A +G+GMV Q+F LV++ T EN++LG + S +K I Sbjct: 61 EILVDGKPVSIRDPNAAISVGIGMVHQHFMLVENFTVLENVMLGAEDSQIL-NKGIAKAR 119 Query: 121 REIEALAEQFGLMFPVDRPVWQLSVGEQQRVEIVKTLYRGAEIIILDEPTSVLTPGEAEQ 180 +E++ L +++ L D + +L VG QQRVEI+K LYR A+I+ILDEPT VLTP EA+ Sbjct: 120 QELKRLEKEYALEVNPDALIEELPVGLQQRVEILKALYRRADILILDEPTGVLTPAEADH 179 Query: 181 LFATLQVMKQAGKTVIMTTHKMKEVMASSDRISVMRKGKMIATLATSGTDELELARLMVG 240 LF L +K GKT+I+ THK++E+MA +D +SVMR+G+M+AT T T ELA LMVG Sbjct: 180 LFRILGQLKAQGKTIILITHKLREIMAITDEVSVMRRGEMVATRTTRETSVEELAELMVG 239 Query: 241 XXXXXXXXXXXAAPGKPLLVVSNLEVTADHGRKALDGMSLQVCEGEIXXXXXXXXNGQKE 300 + PG L V L V G +D +S V GEI NGQ E Sbjct: 240 RRVLLRVEKGESNPGDVKLAVQGLTVKDSRGVTMVDNVSFDVRAGEIVGIAGVAGNGQSE 299 Query: 301 LAEVLTGLRTWKNGDIIFDGGPV------KSASVRGAIDSGISHVPENRMKSGLAGRLGS 354 L E + G+R +G ++ +G PV +A +RG G++HVPE+R GL + Sbjct: 300 LLEAIAGIRKAASGTVLLNGRPVDVTGNADAAELRG---RGLAHVPEDRHHVGLVLKFEE 356 Query: 355 VDNLLFKSYRSSGHSKFGFLKAAKNRSWSQELVERFNVKTPALDTPVQQLSGGNQQKLLF 414 +N + + + FL R ++E + +++++ P SGGNQQK++ Sbjct: 357 CENAILGYHHDPRFANGMFLNIDAIRKDAEEKIAKYDIRPPNARLRTANFSGGNQQKVVL 416 Query: 415 AREVSHQPKLMVAVHPTQGLDVGATAGVHELLMELRSRGSGVXXXXXXXXXXXXXXXRIL 474 ARE+ P +++ PT+G+DVGA +H+ ++E+R +G V RIL Sbjct: 417 AREMERDPDVLIIGQPTRGVDVGAIEFIHKRIIEMRDQGKAVLLVSVELDEIRSLSDRIL 476 Query: 475 VIYNGSIIGESDHEHADREHIGLLMAGIRSKEASA 509 V++ G ++GE E + E +GLLMAG+ ++ +A Sbjct: 477 VMFAGRVVGERSPEATEGE-LGLLMAGVEGRKEAA 510 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.316 0.133 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 33,900,040 Number of extensions: 1331233 Number of successful extensions: 14355 Number of sequences better than 1.0e-05: 1943 Number of HSP's gapped: 10865 Number of HSP's successfully gapped: 2271 Length of query: 510 Length of database: 38,378,431 Length adjustment: 111 Effective length of query: 399 Effective length of database: 25,576,357 Effective search space: 10204966443 Effective search space used: 10204966443 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 118 (50.1 bits)