BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0479.0013.p (375 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEII0702 [R] COG1744 Uncharacterized ABC-type transport system,... 327 1e-89 AGc3292 [R] COG1744 Uncharacterized ABC-type transport system, p... 311 1e-84 SMc00242 [R] COG1744 Uncharacterized ABC-type transport system, ... 301 8e-82 mll0501 [R] COG1744 Uncharacterized ABC-type transport system, p... 290 3e-78 SMa1507 [R] COG1744 Uncharacterized ABC-type transport system, p... 240 3e-63 >BMEII0702 [R] COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein Length = 363 Score = 327 bits (839), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 162/332 (48%), Positives = 224/332 (67%), Gaps = 4/332 (1%) Query: 47 KPRVAFVYIGPPGDGGYTYQHDQGRLYMEKELGIKADT--VENVPESADAERIITELAQ- 103 K +V F+YIGPPGD G+TYQHDQ R + + LG K +T +ENV E ADAER I LA+ Sbjct: 33 KLKVGFIYIGPPGDFGWTYQHDQARKELVEALGDKVETTFLENVAEGADAERSIERLARA 92 Query: 104 NHDIVFTTSFGYMDYTLNVANKFPKVKFLHASGYKTAANMGTYFGKNYQGSYLAGIAAGK 163 + ++FTTSFGYMD T+ V KFP VKF HA+GYKTA NM Y + Y+G Y+ G+ A K Sbjct: 93 GNKLIFTTSFGYMDPTVKVTKKFPDVKFEHATGYKTADNMSAYNARFYEGRYVQGVIAAK 152 Query: 164 MTKKNHLGYVGAFPISEVIYNLNAFTLGAQSVNPEVKVDVVWTNTWYDPATERQAAISLL 223 M+KK GY+G+ P+ EV+ +N+F LGAQSVNP+ +V V+W N+W+DP E AA +L+ Sbjct: 153 MSKKGIAGYIGSVPVPEVVQGINSFMLGAQSVNPDFRVKVIWVNSWFDPGKEADAAKALI 212 Query: 224 DKGADVLLAYQDSPATLQAAAERGAFAGGNDSDMGKYGPDHYLTNPVWNWGPYYVKAVQS 283 D+G D++ + DS A +Q A +RG A G SDM K+ PD LT V WGPYY+ ++ Sbjct: 213 DQGVDIITQHTDSTAAIQVAHDRGIKAFGQASDMIKFAPDTQLTAVVDEWGPYYIDRAKA 272 Query: 284 VMDGTWKSEQYSGDMADGMIDIAPFGSKVPDDVKKLVEDAKAKIISGELDIFTGPISDNQ 343 V+DGTWKS+ M +G++ +APF + +PDDVKKL E+ +A+I SGEL+ FTGPI Sbjct: 273 VLDGTWKSQNIWWGMKEGLVKMAPF-TNMPDDVKKLAEETEARIKSGELNPFTGPIKKQD 331 Query: 344 GKVQVQEGQKLTLDEVLSMNWLAKGIEGTIPK 375 G ++ G+K +L MN+ G++ +P+ Sbjct: 332 GSEWLKAGEKADDQTLLGMNFYVAGVDDKLPQ 363 >AGc3292 [R] COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein Length = 289 Score = 311 bits (796), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 0/330 (0%), Positives = 0/330 (0%), Gaps = 4/330 (1%) Query: 49 RVAFVYIGPPGDGGYTYQHDQGRLYMEKELGIKADT--VENVPESADAERIITELAQN-H 105 V + P + +G+ A N Sbjct: 43 SYTAVEVSPDDFPKFIATLKEGKPGAAVGGNATIPHKEAAYRLADHPDALAEELGAANTI 102 Query: 106 DIVFTTSFGYMDYTLNVANKFPKVKFLHASGYKTAANMGTYFGKNYQGSYLAGIAAGKMT 165 + + + + + S A Sbjct: 103 WMEEGKLHATNTDGYGFVSNLDERHPGWDKTQRAVVFGAGGASRAVIQSLRDRDVAEIHV 162 Query: 166 KKNHLGYVGAFPISEVIYNLNAFTLGAQSVNPEVKVDVVWTNTWYDPATERQAAISLLDK 225 + + Q V + V T+ + S L Sbjct: 163 VNRTVERARELADRFGPRVFSHPQAALQEVMHGAGLFVNTTSLGMNGTEAPHLDFSHLAA 222 Query: 226 GADVLLAYQDSPATLQAAAERGAFAGGNDSDMGKYGPDHYLTNPVWNWGPYYVKAVQSVM 285 A V T + D + P + ++S++ Sbjct: 223 NAVVTDIVYVPLKTPILNMAQEQGIATVDGLGMLLHQAKPGFRRWFGRIPEVDETLRSLI 282 Query: 286 DGTWKSEQYSGDMADGMIDIAPFGSKVPDDVKKLVEDAKAKIISGELDIFTGPISDNQGK 345 Sbjct: 283 - 341 Query: 346 VQVQEGQKLTLDEVLSMNWLAKGIEGTIPK 375 Sbjct: 342 371 >SMc00242 [R] COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein Length = 356 Score = 301 bits (772), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 151/332 (45%), Positives = 216/332 (65%), Gaps = 4/332 (1%) Query: 47 KPRVAFVYIGPPGDGGYTYQHDQGRLYMEKELGIKADT--VENVPESADAERIITELAQN 104 K ++ F+Y+G DGG+T HD GR +EKEL K +T +ENVPE DAER I LA++ Sbjct: 26 KAKICFIYVGSKTDGGWTQAHDIGRQELEKELADKIETQFLENVPEGPDAERAIERLARS 85 Query: 105 -HDIVFTTSFGYMDYTLNVANKFPKVKFLHASGYKTAANMGTYFGKNYQGSYLAGIAAGK 163 ++FTTSFG+MD T+ +A KFP VKF HA+GYKTA N+ TY + Y+G Y+ G A K Sbjct: 86 GCGLIFTTSFGFMDATIKIAGKFPDVKFEHATGYKTAPNVATYNSRFYEGRYIQGQIAAK 145 Query: 164 MTKKNHLGYVGAFPISEVIYNLNAFTLGAQSVNPEVKVDVVWTNTWYDPATERQAAISLL 223 M++K GY+ +FPI EV+ +NAF +GA++VNP+ K+ VVW NTW+DP E AA +L+ Sbjct: 146 MSEKGVAGYIASFPIPEVVMGINAFVIGARAVNPDFKIKVVWANTWFDPGKEADAAKALI 205 Query: 224 DKGADVLLAYQDSPATLQAAAERGAFAGGNDSDMGKYGPDHYLTNPVWNWGPYYVKAVQS 283 D+G D++ + D+ A +Q AAERG A G SDM GP LT V WG YYVK ++ Sbjct: 206 DQGVDIITQHTDTTAPMQVAAERGIKAFGQASDMIAAGPQTQLTAIVDTWGAYYVKRTKA 265 Query: 284 VMDGTWKSEQYSGDMADGMIDIAPFGSKVPDDVKKLVEDAKAKIISGELDIFTGPISDNQ 343 +DGTW + + DG++ +A + + +PDDVK + E +AKI SGEL FTGP++ Sbjct: 266 FLDGTWSTTSSWDGLKDGILTMARY-TNMPDDVKAMAEATEAKIKSGELKPFTGPLNKQD 324 Query: 344 GKVQVQEGQKLTLDEVLSMNWLAKGIEGTIPK 375 G ++EG+ +L MN+ +G++ +P+ Sbjct: 325 GSPWLKEGETADDATLLGMNFYVEGVDDKLPQ 356 >mll0501 [R] COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein Length = 355 Score = 290 bits (742), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 151/332 (45%), Positives = 209/332 (62%), Gaps = 5/332 (1%) Query: 47 KPRVAFVYIGPPGDGGYTYQHDQGRLYMEKELGIKADT--VENVPESADAERIITELAQN 104 K + +VY GP GD GY+YQHDQGRL +EK LG K +T +ENV E DA+R LA+ Sbjct: 26 KLKACWVYTGPIGDFGYSYQHDQGRLEVEKALGDKVETAYLENVSEGPDADRAFERLARE 85 Query: 105 -HDIVFTTSFGYMDYTLNVANKFPKVKFLHASGYKTAANMGTYFGKNYQGSYLAGIAAGK 163 I+F TSFG+MD + VA KFPKV F HA+GYKT N+G Y + Y+G Y+ G A K Sbjct: 86 GCKIIFGTSFGFMDAEVKVAKKFPKVMFEHATGYKTGDNLGIYNARFYEGRYVLGQIAAK 145 Query: 164 MTKKNHLGYVGAFPISEVIYNLNAFTLGAQSVNPEVKVDVVWTNTWYDPATERQAAISLL 223 +K GY+ +FPI EV+ +N+F LGAQS+NP K +VW N+W+DP E AA +L Sbjct: 146 ESKSGVAGYIVSFPIPEVVMGINSFMLGAQSINPNFKAKIVWVNSWFDPGKEADAAKALF 205 Query: 224 DKGADVLLAYQDSPATLQAAAERGAFAGGNDSDMGKYGPDHYLTNPVWNWGPYYVKAVQS 283 D+GAD+++ + DS A LQ A ER G SDM K+ P+ LT+ WGPYY+ VQ+ Sbjct: 206 DQGADIIVQHTDSTAALQVAEERKLHGFGQSSDMIKFAPNAQLTSLTDEWGPYYISRVQA 265 Query: 284 VMDGTWKSEQYSGDMADGMIDIAPFGSKVPDDVKKLVEDAKAKIISGELDIFTGPISDNQ 343 +DGTWK + + DG + +AP+ + +PDDVK L E A K I+G + FTGPI+ Sbjct: 266 AIDGTWKPDNVWLGIKDGAVKLAPY-TNMPDDVKALAE-ATEKKIAGGWNPFTGPIAKQD 323 Query: 344 GKVQVQEGQKLTLDEVLSMNWLAKGIEGTIPK 375 G +++G+ +L MN+ KG++ +P+ Sbjct: 324 GTPWLKDGEVADDGTLLGMNFYVKGVDDKLPQ 355 >SMa1507 [R] COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein Length = 364 Score = 240 bits (612), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 119/328 (36%), Positives = 194/328 (59%), Gaps = 3/328 (0%) Query: 49 RVAFVYIGPPGDGGYTYQHDQGRLYMEKELGIKA--DTVENVPESADAERIITELAQN-H 105 ++ VY+ P + G+T QH G ++KE G K ++N+ DAER+ ELA + + Sbjct: 36 KIGVVYVSPIAEIGWTKQHSLGVDAIKKEFGDKVAITVIDNIFMPQDAERVFRELAASGN 95 Query: 106 DIVFTTSFGYMDYTLNVANKFPKVKFLHASGYKTAANMGTYFGKNYQGSYLAGIAAGKMT 165 ++F TSF + VA +FPK F H SG AN+GT+ K Y+G+++AG A G M+ Sbjct: 96 QLIFGTSFSHGTPMQKVAPRFPKTAFEHCSGIVHRANLGTFEAKYYEGTFVAGAAGGHMS 155 Query: 166 KKNHLGYVGAFPISEVIYNLNAFTLGAQSVNPEVKVDVVWTNTWYDPATERQAAISLLDK 225 K +G++G FPI +++ NA LGAQSVNPEV + ++ N+W+DP E++AA +LL + Sbjct: 156 KSGKIGFIGGFPIPDIVGPANALLLGAQSVNPEVTCNAIFLNSWFDPGKEKEAANTLLSQ 215 Query: 226 GADVLLAYQDSPATLQAAAERGAFAGGNDSDMGKYGPDHYLTNPVWNWGPYYVKAVQSVM 285 G DV+ + D+ +Q A E GA++ G SDM K+G LT +W Y++A + V Sbjct: 216 GCDVICSMTDTATGVQVAGEGGAWSIGYASDMAKFGSGKQLTAFTLDWSSEYLRAAKGVA 275 Query: 286 DGTWKSEQYSGDMADGMIDIAPFGSKVPDDVKKLVEDAKAKIISGELDIFTGPISDNQGK 345 +GTWK+E +A G++ +AP+ +P D++ ++ +A I +G++ + G + D G Sbjct: 276 EGTWKAEARWDGLAAGVVKMAPYNEAIPADIQAKLKQLEADIAAGKIHPYAGELKDQDGN 335 Query: 346 VQVQEGQKLTLDEVLSMNWLAKGIEGTI 373 V+V G L+ ++ MNW +G+ G + Sbjct: 336 VKVAAGSVLSDTDIRGMNWFVRGMIGKL 363 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.315 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 27,080,479 Number of extensions: 1229163 Number of successful extensions: 5276 Number of sequences better than 1.0e-05: 30 Number of HSP's gapped: 5220 Number of HSP's successfully gapped: 30 Length of query: 375 Length of database: 38,378,431 Length adjustment: 108 Effective length of query: 267 Effective length of database: 25,922,359 Effective search space: 6921269853 Effective search space used: 6921269853 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 117 (49.7 bits)