BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0479.0001.p (451 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH3875 [E] COG0624 Acetylornithine deacetylase/Succinyl-diaminop... 531 e-151 DR2025 [E] COG0624 Acetylornithine deacetylase/Succinyl-diaminop... 373 e-103 mll6018 [E] COG0624 Acetylornithine deacetylase/Succinyl-diamino... 307 2e-83 SMc02852 [E] COG0624 Acetylornithine deacetylase/Succinyl-diamin... 298 2e-80 AGc1650 [T] COG0589 Universal stress protein UspA and related nu... 294 3e-79 >BH3875 [E] COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Length = 204 Score = 531 bits (1369), Expect = e-151, Method: Compositional matrix adjust. Identities = 0/443 (0%), Positives = 0/443 (0%) Query: 5 TYFQTEREAQLAELKQWLSIPSISALSSHKEDVLSAAHWLLDTLKRAGLENIELYPTAGH 64 + E + + + L ++ ++ A L Sbjct: 6 MIHAIVDQYSHCEWVENSMSANENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 65 Query: 65 PVIYADYLHAPGKPTILVYGHYDVQPVDPLNLWTTPPFEPEIRDGKLYARGATDDKGQVF 124 A + + + + + Sbjct: 66 GPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKS 125 Query: 125 MHIKAIEAILKQEGTLPVNIKLCIEGEEEIGSVHLPSFLEASKDKLAADAVLVSDTSLLE 184 ++ + + L K ++ ++ Sbjct: 126 PICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEILDGFTKQGTHQAMD 185 Query: 185 RGRPAICTGLRGLCSLEVSVNTALTDLHSGSYGGGVPNXXXXXXXXXXXXXDDKGRVAVE 244 Sbjct: 186 245 Query: 245 GFYDGVPELSPLLREEFAKQGVDEEKIRTXXXXXXXXXXXXXSFVERVGARPTLELNGVY 304 Sbjct: 246 305 Query: 305 GGFQGEGSKTVIPKEAHAKITCRLVGDQDPQHILDVVEAHLKANIQAGAKVQVKQMEKAR 364 Sbjct: 306 365 Query: 365 AFNIDPSNPILQTAADAYGKVYGTRALFTKDGGSIPIMESFSRILQAPVVLMGFGLDDEN 424 Sbjct: 366 425 Query: 425 LHAPDEHFNLENFDKGLLTIVEF 447 Sbjct: 426 448 >DR2025 [E] COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Length = 204 Score = 373 bits (957), Expect = e-103, Method: Compositional matrix adjust. Identities = 0/440 (0%), Positives = 0/440 (0%), Gaps = 2/440 (0%) Query: 10 EREAQLAELKQWLSIPSISALSSHKEDVLSAAHWLLDTLKRAGLENIELYPTAGHPVIYA 69 + E + + + L ++ ++ A L + Sbjct: 11 VDQYSHCEWVENSMSANENNLIWIDLEMTGLDPERDRIIEIATL-VTDANLNILAEGPTI 69 Query: 70 DYLHAPGKPTILVYGHYDVQPVDPLNLWTTPPFEPEIRDGKLYARGATDDKGQVFMHIKA 129 + + ++ + L + I Sbjct: 70 AVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPICG 129 Query: 130 IEAILKQEGTLPVNIKLCIEGEEEIGSVHLPSFLEASKDKLAADAVLVSDTSLLERGRPA 189 + L + A + K + Sbjct: 130 NSIGQDR-RFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEILDGFTKQGTHQAMDDIR 188 Query: 190 ICTGLRGLCSLEVSVNTALTDLHSGSYGGGVPNXXXXXXXXXXXXXDDKGRVAVEGFYDG 249 Sbjct: 189 248 Query: 250 VPELSPLLREEFAKQGVDEEKIRTXXXXXXXXXXXXXSFVERVGARPTLELNGVYGGFQG 309 Sbjct: 249 308 Query: 310 EGSKTVIPKEAHAKITCRLVGDQDPQHILDVVEAHLKANIQAGAKVQVKQMEKARAFNID 369 Sbjct: 309 368 Query: 370 PSNPILQTAADAYGKVYGTRALFTKDGGSIPIMESFSRILQAPVVLMGFGLDDENLHAPD 429 Sbjct: 369 428 Query: 430 EHFNLENFDKGLLTIVEFLK 449 Sbjct: 429 448 >mll6018 [E] COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Length = 204 Score = 307 bits (787), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 0/447 (0%), Positives = 0/447 (0%), Gaps = 2/447 (0%) Query: 6 YFQTEREAQLAELKQWLSIPSISALSSHKEDVLSAAHWLLDTLKRAGLENIELYPTAGHP 65 + + + + L + + + G Sbjct: 9 AIVDQYSHCEWVENSMSANENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPT 68 Query: 66 VIYADYLHAPGKPTILVYGHYDVQPVDPLNLWTTPPFEPEIRDGKLYARGATDDKGQVFM 125 + + + +T + + Sbjct: 69 IAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPIC 128 Query: 126 HIKAIEAILKQEGTLPVNIKLCIEGEEEIGSVHLPSFLEASKDKLAADAVLVSDTSLLER 185 + +P ++ ++ + + R Sbjct: 129 GNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEILDGFTKQGTHQAMDDIR 188 Query: 186 GRPAICTGLRGLCSLEVSVNTALTDLHSGSYGGGVPNXXXXXXXXXXXXXDDKGRVAVEG 245 Sbjct: 189 248 Query: 246 FYDGVPELSPLLREEFAKQGVDEEKIRTXXXXXXXXXXXXXSFVERVGARPTLELNGVYG 305 Sbjct: 249 - 307 Query: 306 GFQGEGSKTVIPKEAHAKITCRLVGDQDPQHILDVVEAHLKANIQAGAKVQVKQM-EKAR 364 Sbjct: 308 367 Query: 365 AFNIDPSNPILQTAADAYGKVYGTRALFTKDGGSIPIMESFSRILQAPVVLMGFGLDDEN 424 Sbjct: 368 427 Query: 425 LHAPDEHFNLENFDKGLLTIVEFLKTV 451 Sbjct: 428 454 >SMc02852 [E] COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Length = 204 Score = 298 bits (762), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 0/446 (0%), Positives = 0/446 (0%), Gaps = 11/446 (2%) Query: 14 QLAELKQWLSIPSISALSSHKEDVLSAAHWLLDTLKRAGLENIELYPTAGHPVIYADYLH 73 + I + + ++ Sbjct: 19 WVENSMSANENNLIWIDLEMTGLDPERDRIIEIATLVTDANL-NILAEGPTIAVHQS--D 75 Query: 74 APGK---PTILVYGHYDVQPVDPLNLWTTPPFEPEIRD---GK--LYARGATDDKGQVFM 125 + + + Sbjct: 76 EQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPICGNSIGQD 135 Query: 126 HIKAIEAILKQEGTLPVNIKLCIEGEEEIGSVHLPSFLEASKDKLAADAVLVSDTSLLER 185 + + + E +E +K + ++ Sbjct: 136 RRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEILDGFTKQGTHQAMDDIRESVAELA 195 Query: 186 GRPAICTGLRGLCSLEVSVNTALTDLHSGSYGGGVPNXXXXXXXXXXXXXDDKGRVAVEG 245 Sbjct: 196 255 Query: 246 FYDGVPELSPLLREEFAKQGVDEEKIRTXXXXXXXXXXXXXSFVERVGARPTLELNGVYG 305 Sbjct: 256 315 Query: 306 GFQGEGSKTVIPKEAHAKITCRLVGDQDPQHILDVVEAHLKANIQAGAKVQVKQMEKARA 365 Sbjct: 316 375 Query: 366 FNIDPSNPILQTAADAYGKVYGTRALFTKDGGSIPIMESFSRILQAPVVLMGFGLDDENL 425 Sbjct: 376 435 Query: 426 HAPDEHFNLENFDKGLLTIVEFLKTV 451 Sbjct: 436 461 >AGc1650 [T] COG0589 Universal stress protein UspA and related nucleotide-binding proteins Length = 507 Score = 294 bits (752), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 168/442 (38%), Positives = 240/442 (54%), Gaps = 7/442 (1%) Query: 13 AQLAELKQWLSIPSISALSSHKEDVLSAAHWLLDTLKRAGLENIELYPTAGHPVIYADYL 72 + L L + + IPSIS ++K + AA WL+ TL G + TAGHP++ A + Sbjct: 61 SSLERLFELVRIPSISTDPAYKAECRKAADWLVRTLSALGF-TASVRDTAGHPMVVAHHD 119 Query: 73 HAP-GKPTILVYGHYDVQPVDPLNLWTTPPFEPEIRD---GK--LYARGATDDKGQVFMH 126 A P +L YGHYDVQPVDPL LW PFEP I+D G+ + RG DDKGQ+ Sbjct: 120 AATKDAPHVLFYGHYDVQPVDPLELWENDPFEPAIKDIGAGRKVITGRGTADDKGQLMTF 179 Query: 127 IKAIEAILKQEGTLPVNIKLCIEGEEEIGSVHLPSFLEASKDKLAADAVLVSDTSLLERG 186 ++A A G LPV + + EGEEE GS L FL+A+ +L AD LV DT + +R Sbjct: 180 VEACRAYKAVNGVLPVRVTILFEGEEESGSPSLKPFLDANAQELKADYALVCDTGMWDRD 239 Query: 187 RPAICTGLRGLCSLEVSVNTALTDLHSGSYGGGVPNXXXXXXXXXXXXXDDKGRVAVEGF 246 PAI LRGL E+ + A DLHSG +GG N D+ GRV + GF Sbjct: 240 TPAIAAALRGLVGEEIVITAADRDLHSGLFGGAAANPIHILTDILAGLHDETGRVTLAGF 299 Query: 247 YDGVPELSPLLREEFAKQGVDEEKIRTXXXXXXXXXXXXXSFVERVGARPTLELNGVYGG 306 YDGV E ++ + G E S +E+ ARPT E+NG+ GG Sbjct: 300 YDGVEEPPANIKASWETLGRSAEAFLGEVGLSVPSGEKGRSVLEQTWARPTAEVNGIIGG 359 Query: 307 FQGEGSKTVIPKEAHAKITCRLVGDQDPQHILDVVEAHLKANIQAGAKVQVKQMEKARAF 366 + G+G KTVI +A AK++ RLVG+Q+P I D A++++ I A V+ + + A Sbjct: 360 YTGDGFKTVIAAKASAKVSFRLVGEQNPAAIRDSFRAYVRSKIPADCSVEFHEHGASPAI 419 Query: 367 NIDPSNPILQTAADAYGKVYGTRALFTKDGGSIPIMESFSRILQAPVVLMGFGLDDENLH 426 + +P+L A +A + + A+ GGSIPI+ F ++L +L+GFGL D+ +H Sbjct: 420 QLSYDSPVLTKAKNALSEEWPKPAVVIGMGGSIPIVGDFQKMLGMDSLLVGFGLTDDRIH 479 Query: 427 APDEHFNLENFDKGLLTIVEFL 448 +P+E + L++F KG+ + V L Sbjct: 480 SPNEKYELQSFHKGIRSWVRIL 501 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.317 0.136 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 33,468,471 Number of extensions: 1382206 Number of successful extensions: 2398 Number of sequences better than 1.0e-05: 63 Number of HSP's gapped: 2349 Number of HSP's successfully gapped: 63 Length of query: 451 Length of database: 38,378,431 Length adjustment: 110 Effective length of query: 341 Effective length of database: 25,691,691 Effective search space: 8760866631 Effective search space used: 8760866631 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 117 (49.7 bits)