BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0476.0068.p
         (374 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH0884 [GEPR] COG0477 Permeases of the major facilitator superfa...   163   4e-40
mll1210 [GEPR] COG0477 Permeases of the major facilitator superf...    55   2e-07

>BH0884 [GEPR] COG0477 Permeases of the major facilitator superfamily
          Length = 401

 Score =  163 bits (412), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 94/296 (31%), Positives = 139/296 (46%), Gaps = 2/296 (0%)

Query: 39  AALYVGSFAMTLVAERILSRIGFKQLIAAXXXXXXXXXXXXXXXXXVKAWFLLRLLVGAG 98
           AALY+G    +   E+ L R G+K +I                      WF+LR+++G  
Sbjct: 54  AALYIGILLASPFIEKPLRRYGYKPIITIGLMAMIVSLLVLPLWQAFWFWFVLRMIIGIA 113

Query: 99  DSAINYAAQLWVLLMTPAAHRGRNLSLYGMSYGLGFSLGPLGISLLRFGQXXXXXXXXXX 158
           D+ +++A Q+W+   +P   RGRN+S YG ++GLGF LGP    LL+  +          
Sbjct: 114 DNMVHFATQVWITTTSPMKKRGRNISFYGFAFGLGFGLGPFMTRLLQINEFLPFILSAIT 173

Query: 159 XXXXXXXXXXXXXDSRPDKAEHGE--GQARRFVRSYSLAWYALIPALLYGYMEASLNSNF 216
                        +      E G   G   R+     L W+AL+PA  YGY+E+SL+ NF
Sbjct: 174 SFAAWLLILRLRNEYPAQDVETGSQSGTWTRYKAVVKLGWFALLPAFCYGYLESSLHGNF 233

Query: 217 PVYGLRIGFSANEIAALLPFAGIGGLLLQMPLGIWSDRYGRKKILIVSXXXXXXXXXXXX 276
           PVYGLR G +  +++ LLP   +GGL+ QMPLG  SDR GRK +L++             
Sbjct: 234 PVYGLRSGLTVEQVSILLPAFVVGGLITQMPLGFLSDRMGRKPLLLMVLFFGGATFMSMV 293

Query: 277 XXEDRFLWTXXXXXXXXXXXXXXXXXXXXYAADILPRNLLPAANVVSSFHYSIGSI 332
             E  F+                      Y AD+LP +LLP  NV+ +  + +GS+
Sbjct: 294 YLEHTFIGLFLSFALAGAFVGSLYSLGVMYMADLLPPHLLPTGNVMMAVSFGLGSM 349


>mll1210 [GEPR] COG0477 Permeases of the major facilitator superfamily
          Length = 297

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 11/176 (6%), Positives = 23/176 (13%), Gaps = 2/176 (1%)

Query: 87  AWFLLRLLVGAGDSAINYAAQLWVLLMTPAAHRGRNLSLYGMSYGLGFSLGPLGISLLRF 146
               L              +         A  +G   S       L      L   +   
Sbjct: 106 KSDELLKWARKNLQTTGCESWPKKCPKPEAYLQGSEDSQVASEIFLCAIAWILHHEIS-- 163

Query: 147 GQXXXXXXXXXXXXXXXXXXXXXXXDSRPDKAEHGEGQARRFVRSYSLAWYALIPALLYG 206
                                            +      +            I +L   
Sbjct: 164 HVVLQHPLVTTAFSTQEEREADSHATKWILGNLYESAPELKKRALGIATAVLCIQSLEVE 223

Query: 207 YMEASLNSNFPVYGLRIGFSANEIAALLPFAGIGGLLLQMPLGIWSDRYGRKKILI 262
                 N++   Y       +               ++   L    +         
Sbjct: 224 NYFCLQNTHPAAYERIYSNISCYPVGNEELIEALCTVMLQYLFHGKNINVNLDGES 279


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.328    0.143    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 19,978,495
Number of extensions: 634981
Number of successful extensions: 1519
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1515
Number of HSP's successfully gapped: 2
Length of query: 374
Length of database: 38,378,431
Length adjustment: 108
Effective length of query: 266
Effective length of database: 25,922,359
Effective search space: 6895347494
Effective search space used: 6895347494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 117 (49.7 bits)