BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0476.0060.p (646 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_mcpA [NT] COG0840 Methyl-accepting chemotaxis protein 333 7e-91 BS_mcpB [NT] COG0840 Methyl-accepting chemotaxis protein 329 1e-89 BS_tlpA [NT] COG0840 Methyl-accepting chemotaxis protein 327 3e-89 BS_tlpB [NT] COG0840 Methyl-accepting chemotaxis protein 322 9e-88 BS_tlpC [NT] COG0840 Methyl-accepting chemotaxis protein 174 5e-43 >BS_mcpA [NT] COG0840 Methyl-accepting chemotaxis protein Length = 661 Score = 333 bits (853), Expect = 7e-91, Method: Compositional matrix adjust. Identities = 203/648 (31%), Positives = 361/648 (55%), Gaps = 6/648 (0%) Query: 1 MMLIFTLMLVIPILLVSYFSYSSSKKQLELKMQESTHSSVEMLQGTINETISAAERNVRQ 60 +++ F +L+IP+++++ F+Y S+ L+ +M S +V+ L IN +I E + Sbjct: 17 LLVSFLSILIIPVVILAIFAYQSASSSLDRQMMGSALENVQQLNEIINTSIGEKENSADY 76 Query: 61 LSQQVTTADIEAK-NPETKALIELFMKEHPELEVITLGSSSGAWMKSPNIGQQD-YDPRT 118 S+ +T AK N + ++ + ++E I + G + + P++ Y+P Sbjct: 77 FSEWLTKEKYNAKSNASIREKFSQYISINKDVESIYTSDTKGHFTRYPDLPMPSGYNPVE 136 Query: 119 RDWFKASMANAGNVTIIDPFVSLTTGNYNLFISESLKDGKGALTTSLALKHMGEMINKVK 178 RDW+K ++AN G V I DP+ + +T + I++ KDG G + ++ ++++ + KV Sbjct: 137 RDWYKKAVANKGKVVITDPYKTASTNTMVVTIAQQTKDGSGVIAINMTIENLLKTTKKVN 196 Query: 179 LGRDGYIFVVDRNKKFVSHPVKKAGDEVAEDVI-QLLDKDSGDLSYTSPDTGLQMRGYYT 237 +G GY F++ ++KK V+HP +++G E+ D + ++L D GD YT G + + + Sbjct: 197 IGTQGYAFIMTKDKKVVAHPNEQSGTELKGDWLDKMLSADKGDFQYTMD--GDKKKMAFD 254 Query: 238 TDKTTGFKIVGVLSTKEFSDASLPVLYNXXXXXXXXXXXXXXMMFFIIKAITKPILSLNR 297 T+K TG+KI G + E +A+ PVL+ +M II++IT P+ L Sbjct: 255 TNKLTGWKIGGTMYLDEIHEAAQPVLHLALIVLAAAIIIGIIVMTLIIRSITTPLKQLVG 314 Query: 298 SARRVSEGYLNEEIRINRTDEIGQLAQNYNLMVGSLRNIVVDISDTSGVLASSSQQLTAT 357 S++R+SEG L E I I DE+G+L +++N M SLR+++ I D+ +A+SS++LTA+ Sbjct: 315 SSKRISEGDLTETIDIRSKDELGELGKSFNNMASSLRSLIHAIQDSVDNVAASSEELTAS 374 Query: 358 TEENSRATGYVAELVQNSSXXXXXXXXXXXXXXXXXXXXSSGIQKXXXXXXXXXXXXXXX 417 + S+AT ++ ++ S + G+ Sbjct: 375 AAQTSKATEHITLAIEQFSNGNEKQNENIETAAEHIYQMNDGLTNMAQASEVITDSSVQS 434 Query: 418 XXXXXXGSRKIAQMSLQMDAIRQSTHQSSELISQLNGLNSQVSEMSSAISNIAVQTNLLS 477 G + + Q QM+ I +S ++ +++ L + ++ + I+ IA QTNLL+ Sbjct: 435 TEIASEGGKLVHQTVGQMNVIDKSVKEAEQVVRGLETKSKDITNILRVINGIADQTNLLA 494 Query: 478 LNAGIEAARAGEHGRGFAVVASEVRKLADQSKTTAGNIQDTIEQMTELIDRTYQAIHVTV 537 LNA IEAARAGE+GRGF+VVA EVRKLA QS +A I+ I ++ + I+ T + +V Sbjct: 495 LNAAIEAARAGEYGRGFSVVAEEVRKLAVQSADSAKEIEGLIIEIVKEIN-TSLGMFQSV 553 Query: 538 AADVELGIQATTEAKEAFISIEQSTAKINGQIHDISAITEQMSAGAQEVAASVQEISNIS 597 +V+ G+ T + + +F I + T +I G++ ++SA +Q+SA ++EV+ + + I++IS Sbjct: 554 NQEVQTGLDITDKTEMSFKRISEMTNQIAGELQNMSATVQQLSASSEEVSGASEHIASIS 613 Query: 598 RSTSDAFQNVTAATEQQLASMEEISASSTELSKMAADLQHKIERFKLE 645 + +S Q++ A+ E+QLASMEEIS+S+ LS MA +L+ +RFK+E Sbjct: 614 KESSAHIQDIAASAEEQLASMEEISSSAETLSSMAEELRDMTKRFKIE 661 >BS_mcpB [NT] COG0840 Methyl-accepting chemotaxis protein Length = 662 Score = 329 bits (843), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 200/632 (31%), Positives = 354/632 (56%), Gaps = 7/632 (1%) Query: 18 YFSYSSSKKQLELKMQESTHSSVEMLQGTINETISAAERNVRQLSQQVTTADIEAKN--P 75 + SY S+ +L+ ++ + +SV+ T+ + + V S+ + + + K+ Sbjct: 34 FSSYRSASGKLDQEIMGNAKNSVDTFNTTVTNDLGEKAKAVTFFSESLKRSAFKGKSNQE 93 Query: 76 ETKALIELFMKEHPELEVITLGSSSGAWMKSPNIG-QQDYDPRTRDWFKASMANAGNVTI 134 E KA ++ + + I G+ +G ++++P + YDPR R W++ +M G + + Sbjct: 94 EIKAKFSQYVSINQGVARIYGGADNGTYVQAPKEKLPEGYDPRQRPWYQDAMKAGGEIVV 153 Query: 135 IDPFVSLTTGNYNLFISESLKDGKGALTTSLALKHMGEMINKVKLGRDGYIFVVDRNKKF 194 DP+V+ + G+ + I++ LKDG G + + + + E + ++K+G++GY F+ +NK + Sbjct: 154 TDPYVAASDGSMVITIAQELKDGSGVVAMDITIDKLLEQMKQIKVGKEGYAFIATKNKTY 213 Query: 195 VSHPVKKAGDEVAED-VIQLLDKDSGDLSYTSPDTGLQMRGYYTTDKTTGFKIVGVLSTK 253 V+H KAG++++ D V ++ DSG+L YT + +M YTT++ TG+KI G + Sbjct: 214 VAHKNHKAGEKLSGDWVAKMYANDSGELQYTLNNEDKKMT--YTTNELTGWKIAGTMYMD 271 Query: 254 EFSDASLPVLYNXXXXXXXXXXXXXXMMFFIIKAITKPILSLNRSARRVSEGYLNEEIRI 313 E DAS VL ++ FI+++ITKP+ L +S++ +S G L E I I Sbjct: 272 EIKDASKSVLTTGMIVLIASIVAGGILILFIVRSITKPLKRLVQSSKTISRGDLTETIEI 331 Query: 314 NRTDEIGQLAQNYNLMVGSLRNIVVDISDTSGVLASSSQQLTATTEENSRATGYVAELVQ 373 + DE+G+L +++N M SLR+++ I ++ +A+SS+QLTA+ + S+AT ++ ++ Sbjct: 332 HSKDELGELGESFNEMGQSLRSLISAIQNSVNNVAASSEQLTASAGQTSKATEHITMAIE 391 Query: 374 NSSXXXXXXXXXXXXXXXXXXXXSSGIQKXXXXXXXXXXXXXXXXXXXXXGSRKIAQMSL 433 S + G+Q+ G + + Q Sbjct: 392 QFSNGNEEQSRKVESSSHQLNLMNEGLQQVSQTSSDITKASIQSTEIAGTGEKFVQQTGG 451 Query: 434 QMDAIRQSTHQSSELISQLNGLNSQVSEMSSAISNIAVQTNLLSLNAGIEAARAGEHGRG 493 QM++I QS Q+ ++ L G + ++ + I+ IA QTNLL+LNA IEAARAGE GRG Sbjct: 452 QMNSINQSVQQAEAVVKGLEGKSKDITSILRVINGIADQTNLLALNAAIEAARAGESGRG 511 Query: 494 FAVVASEVRKLADQSKTTAGNIQDTIEQMTELIDRTYQAIHVTVAADVELGIQATTEAKE 553 F+VVA EVRKLA QS +A I+ I+++ ID + V +V+ G+ T KE Sbjct: 512 FSVVAEEVRKLAVQSADSAKEIEKLIQEIVAEIDTSLHMFK-EVNQEVQSGLVVTDNTKE 570 Query: 554 AFISIEQSTAKINGQIHDISAITEQMSAGAQEVAASVQEISNISRSTSDAFQNVTAATEQ 613 +F SI T +I G++ +++ EQ+S +Q V+A+V I+++S+ +S + Q++ A+ E+ Sbjct: 571 SFQSIFSMTNEIAGKLQTMNSTVEQLSDRSQHVSAAVSGIADVSKESSASIQDIAASAEE 630 Query: 614 QLASMEEISASSTELSKMAADLQHKIERFKLE 645 QLASMEEIS+S+T L++MA +L+ ++FK+E Sbjct: 631 QLASMEEISSSATTLAQMAEELRDLTKQFKIE 662 >BS_tlpA [NT] COG0840 Methyl-accepting chemotaxis protein Length = 83 Score = 327 bits (839), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 0/641 (0%), Positives = 0/641 (0%), Gaps = 10/641 (1%) Query: 11 IPILLVSYFSYSSSKKQLELKMQESTHSSVEMLQGTINETISAAERNVRQLSQQVTTADI 70 Sbjct: 27 86 Query: 71 -EAKNPETKALIELFMKEHPELEVITLGSSSGAWMKSPNIGQ-QDYDPRTRDWFKASMAN 128 Sbjct: 87 146 Query: 129 AGNVTIIDPFVSLTTGNYNLFISESLKDGKGALTTSLALKHMGEMINKVKLGRDGYIFVV 188 Sbjct: 147 206 Query: 189 DRNKKFVSHPVKKAGDEVAEDVIQLLDKD-SGDLSYTSPDTGLQMRGYYTTDKTTGFKIV 247 Sbjct: 207 -- 264 Query: 248 GVLSTKEFSDASLPVLYNXXXXXXXXXXXXXXMMFFIIKAITKPILSLNRSARRVSEGYL 307 Sbjct: 265 324 Query: 308 NEEIRINRTDEIGQLAQNYNLMVGSLRNIVVDISDTSGVLASSSQQLTATTEENSRATGY 367 Sbjct: 325 384 Query: 368 VAELVQNSSXXXXXXXXXXXXXXXXXXXXSSGIQKXXXXXXXXXXXXXXXXXXXXXGSRK 427 Sbjct: 385 444 Query: 428 IAQMSLQMDAIRQSTHQSSELISQLNGLNSQVSEMSSAISNIAVQTNLLSLNAGIEAARA 487 Sbjct: 445 504 Query: 488 GEHGRGFAVVASEVRKLADQSKTTAGNIQDTIEQMTELIDRTYQAIHV--TVAADVELGI 545 Sbjct: 505 --- 561 Query: 546 QATTEAKEAFISIEQSTAKINGQIHDISAITEQMSAGAQEVAASVQEISNISRSTSDAFQ 605 Sbjct: 562 621 Query: 606 NVTAATEQQLASMEEISASSTELSKMAADLQHKIERFKLEE 646 Sbjct: 622 662 >BS_tlpB [NT] COG0840 Methyl-accepting chemotaxis protein Length = 83 Score = 322 bits (826), Expect = 9e-88, Method: Compositional matrix adjust. Identities = 0/651 (0%), Positives = 0/651 (0%), Gaps = 12/651 (1%) Query: 1 MMLIFTLMLVIPILLVSYFSYSSSKKQLELKMQESTHSSVEMLQGTINETISAAERNVRQ 60 + L ++ + + +S + + ++ + +I + Sbjct: 17 SDNVEKLQDMVQNTIENIEEAEASMEFASGEDKQRIKEKNARREQSIEAFR---NEIQDE 73 Query: 61 LSQQVTTADIEAKNPETKALIELFMKEHPELE----VITLGSSSGAWMKSPNIG-QQDYD 115 Sbjct: 74 133 Query: 116 PRTRDWFKASMANAGNVTIIDPFVSLTTGNYNLFISESLKDGKGALTTSLALKHMGEMIN 175 Sbjct: 134 193 Query: 176 KVKLGRDGYIFVVDRNKKFVSHPVKKAGDEVAEDVI-QLLDKDSGDLSYTSPDTGLQMRG 234 Sbjct: 194 -- 251 Query: 235 YYTTDKTTGFKIVGVLSTKEFSDASLPVLYNXXXXXXXXXXXXXXMMFFIIKAITKPILS 294 Sbjct: 252 311 Query: 295 LNRSARRVSEGYLNEEIRINRTDEIGQLAQNYNLMVGSLRNIVVDISDTSGVLASSSQQL 354 Sbjct: 312 371 Query: 355 TATTEENSRATGYVAELVQNSSXXXXXXXXXXXXXXXXXXXXSSGIQKXXXXXXXXXXXX 414 Sbjct: 372 431 Query: 415 XXXXXXXXXGSRKIAQMSLQMDAIRQSTHQSSELISQLNGLNSQVSEMSSAISNIAVQTN 474 Sbjct: 432 491 Query: 475 LLSLNAGIEAARAGEHGRGFAVVASEVRKLADQSKTTAGNIQDTIEQMTELIDRTYQAIH 534 Sbjct: 492 - 550 Query: 535 VTVAADVELGIQATTEAKEAFISIEQSTAKINGQIHDISAITEQMSAGAQEVAASVQEIS 594 Sbjct: 551 610 Query: 595 NISRSTSDAFQNVTAATEQQLASMEEISASSTELSKMAADLQHKIERFKLE 645 Sbjct: 611 661 >BS_tlpC [NT] COG0840 Methyl-accepting chemotaxis protein Length = 83 Score = 174 bits (440), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 0/371 (0%), Positives = 0/371 (0%), Gaps = 13/371 (3%) Query: 280 MMFFIIKAITKPILSLNRSARRVSEGYLNEEIRINRTDEIGQLAQNYNLMVGSLRNIVVD 339 Sbjct: 203 262 Query: 340 ISDTSGVLASSSQQLTATTEENSRATGYVAELVQNSSXXXXXXXXXXXXXXXXXXXXSSG 399 Sbjct: 263 322 Query: 400 IQKXXXXXXXXXXXXXXXXXXXXXGSRKIAQMSLQMDAIRQSTHQSSELISQLNGLNSQV 459 Sbjct: 323 382 Query: 460 SEMSSAISNIAVQTNLLSLNAGIEAARAGEHGRGFAVVASEVRKLADQSKTTAGNIQDTI 519 Sbjct: 383 442 Query: 520 EQMTELIDRTYQAI-HV-TVAADVELGIQATTEAKEAFISIEQSTAKINGQIHDISAITE 577 Sbjct: 443 --- 499 Query: 578 QMSAGAQEV----AASVQEISNISRSTSDAFQNVTAATEQQLASMEEISASSTELSKMAA 633 Sbjct: 500 ---- 555 Query: 634 DLQHKIERFKL 644 Sbjct: 556 566 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.311 0.125 0.326 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 35,195,465 Number of extensions: 1267377 Number of successful extensions: 9263 Number of sequences better than 1.0e-05: 806 Number of HSP's gapped: 8265 Number of HSP's successfully gapped: 816 Length of query: 646 Length of database: 38,378,431 Length adjustment: 113 Effective length of query: 533 Effective length of database: 25,345,689 Effective search space: 13509252237 Effective search space used: 13509252237 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 119 (50.4 bits)