BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0476.0059.p
         (127 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMc04026 [ER] COG0493 NADPH-dependent glutamate synthase beta ch...   119   8e-28
SPAPB1E7.07_4 [ER] COG0493 NADPH-dependent glutamate synthase be...   114   4e-26
BMEII0039 [ER] COG0493 NADPH-dependent glutamate synthase beta c...   107   4e-24
CAC1674 [ER] COG0493 NADPH-dependent glutamate synthase beta cha...   105   1e-23
DR0182 [ER] COG0493 NADPH-dependent glutamate synthase beta chai...   105   2e-23

>SMc04026 [ER] COG0493 NADPH-dependent glutamate synthase beta chain and
           related oxidoreductases
          Length = 252

 Score =  119 bits (299), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 0/132 (0%), Positives = 0/132 (0%), Gaps = 15/132 (11%)

Query: 2   TTKFVGDEEGNLKELHTVQIQRMVDETGRKIYQPIPGTEAVYPAQLALIAIGFDGPEQDI 61
                                                                       
Sbjct: 353 --------                                                     404

Query: 62  I-----EELKLDTDRR--SNVKARYGKFNTNVDKVFAAGDMRRGQSLVVWAINEGREAAR 114
                                                                       
Sbjct: 405                                                              464

Query: 115 EVDKYLMGSTVL 126
                       
Sbjct: 465              476


>SPAPB1E7.07_4 [ER] COG0493 NADPH-dependent glutamate synthase beta chain and
           related oxidoreductases
          Length = 252

 Score =  114 bits (285), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 0/126 (0%), Positives = 0/126 (0%)

Query: 1   MTTKFVGDEEGNLKELHTVQIQRMVDETGRKIYQPIPGTEAVYPAQLALIAIGFDGPEQD 60
                                                                       
Sbjct: 361                                                              420

Query: 61  IIEELKLDTDRRSNVKARYGKFNTNVDKVFAAGDMRRGQSLVVWAINEGREAAREVDKYL 120
                                                                       
Sbjct: 421                                                              480

Query: 121 MGSTVL 126
                 
Sbjct: 481        486


>BMEII0039 [ER] COG0493 NADPH-dependent glutamate synthase beta chain and
           related oxidoreductases
          Length = 252

 Score =  107 bits (267), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 0/132 (0%), Positives = 0/132 (0%), Gaps = 16/132 (12%)

Query: 2   TTKFVGDEEGNLKELHTVQIQRMVDETGRKIYQPIPGTEAVYPAQLALIAIGFDGPEQD- 60
                                                                       
Sbjct: 375 ---------                                                    425

Query: 61  IIEE----LKLDTDRRSN--VKARYGKFNTNVDKVFAAGDMRRGQSLVVWAINEGREAAR 114
                                                                       
Sbjct: 426                                                              485

Query: 115 EVDKYLMGSTVL 126
                       
Sbjct: 486              497


>CAC1674 [ER] COG0493 NADPH-dependent glutamate synthase beta chain and
           related oxidoreductases
          Length = 252

 Score =  105 bits (263), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 0/127 (0%), Positives = 0/127 (0%), Gaps = 2/127 (1%)

Query: 1   MTTKFVGDEEGNLKELHTVQIQRMVDETGRKIYQPIPGTEAVYPAQLALIAIGFDGPEQD 60
                                                                       
Sbjct: 352                                                              411

Query: 61  -IIEELKLDTDRRSNVKARYGKFNTNVDKVFAAGDMRRGQSLVVWAINEGREAAREVDKY 119
                                                                       
Sbjct: 412 -                                                            470

Query: 120 LMGSTVL 126
                  
Sbjct: 471         477


>DR0182 [ER] COG0493 NADPH-dependent glutamate synthase beta chain and
           related oxidoreductases
          Length = 252

 Score =  105 bits (262), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 0/128 (0%), Positives = 0/128 (0%), Gaps = 9/128 (7%)

Query: 2   TTKFVGDEEGNLKELHTVQIQRMVDETGRKIYQPIPGTEAVYPAQLALIAIGFDGPEQDI 61
                                                                       
Sbjct: 365 ------                                                       418

Query: 62  IEELKLDTDRRSNVKA---RYGKFNTNVDKVFAAGDMRRGQSLVVWAINEGREAAREVDK 118
                                                                       
Sbjct: 419                                                              478

Query: 119 YLMGSTVL 126
                   
Sbjct: 479          486


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.317    0.136    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 9,614,715
Number of extensions: 412039
Number of successful extensions: 786
Number of sequences better than 1.0e-05: 34
Number of HSP's gapped: 754
Number of HSP's successfully gapped: 34
Length of query: 127
Length of database: 38,378,431
Length adjustment: 93
Effective length of query: 34
Effective length of database: 27,652,369
Effective search space: 940180546
Effective search space used: 940180546
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)