BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0476.0046.p
         (86 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_yfkJ [T] COG0394 Protein-tyrosine-phosphatase                       80   6e-16
BH2238 [T] COG0394 Protein-tyrosine-phosphatase                        78   3e-15
L67624 [T] COG0394 Protein-tyrosine-phosphatase                        73   1e-13
lin0937 [T] COG0394 Protein-tyrosine-phosphatase                       67   6e-12
SA1697 [T] COG0394 Protein-tyrosine-phosphatase                        64   4e-11

>BS_yfkJ [T] COG0394 Protein-tyrosine-phosphatase
          Length = 346

 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 5/86 (5%), Positives = 12/86 (13%), Gaps = 1/86 (1%)

Query: 1   MKARLVSSDDFRDFDYIICMDQSNGENVRKIPGGRN-ADLLFFMDLLPEEELREVPDPYF 59
           +   L              +   +  N + I   +          L    +  +      
Sbjct: 69  VGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTDYLDL 128

Query: 60  TGNFEEVYRLISAGCDVLLNRIIKEK 85
                        G            
Sbjct: 129 YQVHWPQRPTNCFGKLGYSWTDSAPA 154


>BH2238 [T] COG0394 Protein-tyrosine-phosphatase
          Length = 346

 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 5/86 (5%), Positives = 12/86 (13%), Gaps = 1/86 (1%)

Query: 1   MKARLVSSDDFRDFDYIICMDQSNGENVRKIPGGRN-ADLLFFMDLLPEEELREVPDPYF 59
           +   L              +   +  N + I   +          L    +  +      
Sbjct: 69  VGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTDYLDL 128

Query: 60  TGNFEEVYRLISAGCDVLLNRIIKEK 85
                        G            
Sbjct: 129 YQVHWPQRPTNCFGKLGYSWTDSAPA 154


>L67624 [T] COG0394 Protein-tyrosine-phosphatase
          Length = 346

 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 2/81 (2%), Positives = 10/81 (12%), Gaps = 8/81 (9%)

Query: 3   ARLVSSDDFRDFDYIICMDQSNGENVRKI-PGGRNADLLFFMDLLPEEELREVPDPYFTG 61
                    +          S   +         +   +            +      T 
Sbjct: 72  WLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREAL-------HDSLKRLQTD 124

Query: 62  NFEEVYRLISAGCDVLLNRII 82
             +               ++ 
Sbjct: 125 YLDLYQVHWPQRPTNCFGKLG 145


>lin0937 [T] COG0394 Protein-tyrosine-phosphatase
          Length = 346

 Score = 67.0 bits (162), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 8/84 (9%), Positives = 18/84 (21%)

Query: 1   MKARLVSSDDFRDFDYIICMDQSNGENVRKIPGGRNADLLFFMDLLPEEELREVPDPYFT 60
           +   L              +   +  N + I   +  D     + L +   R   D    
Sbjct: 69  VGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTDYLDL 128

Query: 61  GNFEEVYRLISAGCDVLLNRIIKE 84
                  R  +    +  +     
Sbjct: 129 YQVHWPQRPTNCFGKLGYSWTDSA 152


>SA1697 [T] COG0394 Protein-tyrosine-phosphatase
          Length = 346

 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 5/72 (6%), Positives = 14/72 (19%), Gaps = 1/72 (1%)

Query: 13  DFDYIICMDQSNGENVRKIPGGRNADLLFFMDLLPEEELREVPDPYFTGNFEEVYRLISA 72
             + +I   + +G +     G R    L   ++        +                  
Sbjct: 78  SREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALH-DSLKRLQTDYLDLYQVHWPQR 136

Query: 73  GCDVLLNRIIKE 84
             +         
Sbjct: 137 PTNCFGKLGYSW 148


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.324    0.145    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 7,136,382
Number of extensions: 272406
Number of successful extensions: 343
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 342
Number of HSP's successfully gapped: 9
Length of query: 86
Length of database: 38,378,431
Length adjustment: 56
Effective length of query: 30
Effective length of database: 31,919,727
Effective search space: 957591810
Effective search space used: 957591810
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)