BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0476.0022.p (213 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC1832 [KT] COG1974 SOS-response transcriptional repressors (Re... 213 1e-55 STM1082 [K] COG2207 AraC-type DNA-binding domain-containing prot... 132 4e-31 lexA [KT] COG1974 SOS-response transcriptional repressors (RecA-... 117 1e-26 ZlexA [KT] COG1974 SOS-response transcriptional repressors (RecA... 117 1e-26 >CAC1832 [KT] COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) Length = 673 Score = 213 bits (543), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 18/199 (9%), Positives = 43/199 (21%), Gaps = 8/199 (4%) Query: 13 QLAILEFIRNEVRSKGYPPSVREIGEAVGLASSSTVHGHLDRLEKKGLIRRDPTKPRAIE 72 + + V A + H+ + R+ + Sbjct: 11 VEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQT 70 Query: 73 LLGQEDSENVHQFVQTVTRIPVVGKVTAGVPITATENIEDYFPLPTHYVGD-NKVFMLSV 131 L +E ++ +G A ++ K + Sbjct: 71 LGRKEARG------LMISTFHTLGLDIIKREYAALGMKANFSLFDDTDQLALLKELTEGL 124 Query: 132 LGDSMIDAGIMNGDYVIVRQQQTADNGDIVVAMTEEDEATVKTFYKERDHIRLQPENPAY 191 + D + + + + A+ E D Y D + Sbjct: 125 IEDDKVLLQQLISTISNWKNDLKTPSQAAASAIGERD-RIFAHCYGLYDAHLKACNVLDF 183 Query: 192 EPLRLNRVTILGRVIGLFR 210 + L L +L + + Sbjct: 184 DDLILLPTLLLQANEEVRK 202 >STM1082 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 259 Score = 132 bits (332), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 14/210 (6%), Positives = 36/210 (17%), Gaps = 16/210 (7%) Query: 6 MSKISSRQLAILEFIRNEVRSKGYPPSVREIGEAVGLASSSTVHGHLDRLEKKGLIRRDP 65 M + R I + + G + P Sbjct: 1 MHIRHQDLTTAEVRSSHLHRLHRVTLFSAAICHITQGSKVIIQD-DSRLVAGPGELIIIP 59 Query: 66 TKPRAIELLGQEDSENVHQFVQTVTRIPVVGKVTAGVPITATENIEDYFPLPTHYVGDN- 124 + ++ + + I + + P + Sbjct: 60 ANTPLEII-----NQPAQ------NGFRSDLLLLSPEIIARFKTMYVQDYPPANLTSLCT 108 Query: 125 KVFMLSVLGDSMIDAGIMNGDYVIVRQQQTADNGDIVVAMTEEDEATVKTFYKERDHIRL 184 + + + G V +++ Q ++ + Sbjct: 109 PMSRSLTFMWENVLDAVRQGLPVGLQEHQAMGLLLALLHDG-AAGPLLIERRYTLTEQVR 167 Query: 185 QPENPAYEPL--RLNRVTILGRVIGLFRDI 212 Q + L L R Sbjct: 168 QLIMLSPAKLWTAQEIARRLAMGTSTLRRR 197 >lexA [KT] COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) Length = 673 Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 15/210 (7%), Positives = 41/210 (19%), Gaps = 16/210 (7%) Query: 6 MSKISSRQLAILEFIRNEVRSKGYPPSVREIGEAVGLASSSTVHGHLDRLEKKGLIRRDP 65 M +Q A+ + G + + + Sbjct: 1 MRLNPGQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAA 60 Query: 66 TKPRAIELLGQEDSENVHQFVQTVTRIPVVGKVTAGVPITATENIEDYFPLPTHYVGDNK 125 + + + + T E Sbjct: 61 REMKERVGQ-TLGRKE----------ARGLMISTFHTLGLDIIKREYAALGMKANFSLFD 109 Query: 126 VFMLSVLGDSMIDAGIMNGDYVIVRQQQTADNGDIVVAMTEEDEATVKTFYKERDHIRLQ 185 L + + I + ++ + T N + A ++R Sbjct: 110 DTDQLALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTP-SQAAASAIGERDRIFAHCY 168 Query: 186 PENPAYEP----LRLNRVTILGRVIGLFRD 211 A+ L + + +L ++ + Sbjct: 169 GLYDAHLKACNVLDFDDLILLPTLLLQANE 198 >ZlexA [KT] COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) Length = 673 Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 15/210 (7%), Positives = 41/210 (19%), Gaps = 16/210 (7%) Query: 6 MSKISSRQLAILEFIRNEVRSKGYPPSVREIGEAVGLASSSTVHGHLDRLEKKGLIRRDP 65 M +Q A+ + G + + + Sbjct: 1 MRLNPGQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAA 60 Query: 66 TKPRAIELLGQEDSENVHQFVQTVTRIPVVGKVTAGVPITATENIEDYFPLPTHYVGDNK 125 + + + + T E Sbjct: 61 REMKERVGQ-TLGRKE----------ARGLMISTFHTLGLDIIKREYAALGMKANFSLFD 109 Query: 126 VFMLSVLGDSMIDAGIMNGDYVIVRQQQTADNGDIVVAMTEEDEATVKTFYKERDHIRLQ 185 L + + I + ++ + T N + A ++R Sbjct: 110 DTDQLALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTP-SQAAASAIGERDRIFAHCY 168 Query: 186 PENPAYEP----LRLNRVTILGRVIGLFRD 211 A+ L + + +L ++ + Sbjct: 169 GLYDAHLKACNVLDFDDLILLPTLLLQANE 198 Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 15/210 (7%), Positives = 41/210 (19%), Gaps = 16/210 (7%) Query: 6 MSKISSRQLAILEFIRNEVRSKGYPPSVREIGEAVGLASSSTVHGHLDRLEKKGLIRRDP 65 M +Q A+ + G + + + Sbjct: 1 MRLNPGQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAA 60 Query: 66 TKPRAIELLGQEDSENVHQFVQTVTRIPVVGKVTAGVPITATENIEDYFPLPTHYVGDNK 125 + + + + T E Sbjct: 61 REMKERVGQ-TLGRKE----------ARGLMISTFHTLGLDIIKREYAALGMKANFSLFD 109 Query: 126 VFMLSVLGDSMIDAGIMNGDYVIVRQQQTADNGDIVVAMTEEDEATVKTFYKERDHIRLQ 185 L + + I + ++ + T N + A ++R Sbjct: 110 DTDQLALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTP-SQAAASAIGERDRIFAHCY 168 Query: 186 PENPAYEP----LRLNRVTILGRVIGLFRD 211 A+ L + + +L ++ + Sbjct: 169 GLYDAHLKACNVLDFDDLILLPTLLLQANE 198 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.138 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 15,926,941 Number of extensions: 645033 Number of successful extensions: 1314 Number of sequences better than 1.0e-05: 18 Number of HSP's gapped: 1290 Number of HSP's successfully gapped: 19 Length of query: 213 Length of database: 38,378,431 Length adjustment: 102 Effective length of query: 111 Effective length of database: 26,614,363 Effective search space: 2954194293 Effective search space used: 2954194293 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 113 (48.1 bits)