BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0476.0011.p (122 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH2363 [O] COG0464 ATPases of the AAA+ class 126 7e-30 BH2289 [O] COG0464 ATPases of the AAA+ class 75 2e-14 SMb20196 [O] COG0464 ATPases of the AAA+ class 70 5e-13 MT0295_2 [O] COG0464 ATPases of the AAA+ class 70 9e-13 Rv0282_2 [O] COG0464 ATPases of the AAA+ class 70 9e-13 >BH2363 [O] COG0464 ATPases of the AAA+ class Length = 315 Score = 126 bits (317), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 63/120 (52%), Positives = 84/120 (70%), Gaps = 3/120 (2%) Query: 1 VLILAGYSSEIDYFLMSNPGLPSRFPIQVEFPDYTIDQLLQIAELMAKERDYILMPQAIL 60 VLILAGYS E+DYFL NPGLPSRFPI ++FP+YT DQL+QI + M KER+Y L +A Sbjct: 190 VLILAGYSDEMDYFLSLNPGLPSRFPIAMDFPNYTTDQLMQIVKNMVKEREYQLTKRAQH 249 Query: 61 KLKQHLLLEKTESLHAFSNARYVRNSIEKAVRAQAVRLLNQYESNSPGKQELMTLRTEDF 120 +++H+ + FSN RY+RN IE+A+R QAVRLL + S ++ L+ L+ EDF Sbjct: 250 LIREHVTKVRQYEGRTFSNGRYIRNMIEEAIRRQAVRLLQE---GSYSREALLLLKAEDF 306 >BH2289 [O] COG0464 ATPases of the AAA+ class Length = 775 Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 42/100 (42%), Positives = 60/100 (60%), Gaps = 4/100 (4%) Query: 1 VLILAGYSSEIDYFLMSNPGLPSRFP--IQVEFPDYTIDQLLQIAELMAKERDYILMPQA 58 LILAGY E++ FL SNPGL SRFP Q+ DY+ID+LL I E +A + D+ L A Sbjct: 384 ALILAGYPVEMEQFLRSNPGLRSRFPEQNQIHLSDYSIDELLLIGEQVALDNDFTLTDGA 443 Query: 59 ILKLKQHLLLEKTESLHAFSNARYVRNSIEKAVRAQAVRL 98 L LKQ +E+ + +F N R V+N + A+ + ++ Sbjct: 444 RLALKQR--IEEAQVDESFGNGRTVKNIVMNAIFQKGAKV 481 Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 43/120 (35%), Positives = 68/120 (56%), Gaps = 7/120 (5%) Query: 1 VLILAGYSSEIDYFLMSNPGLPSRFPIQVEFPDYTIDQLLQIAELMAKERDYILMPQAIL 60 V+I+AGY E++ L +NPGL SRF F DYT +L + + +++ Y L +A Sbjct: 654 VVIMAGYPKEMEELLTANPGLKSRFKKVFTFADYTKAELQAMIDYHSEQYGYHLDEEARR 713 Query: 61 KLKQHLLLEKTESLHAFSNARYVRNSIEKAVRAQAVRLLNQYESNSPGKQELMTLRTEDF 120 ++ Q L ES H SN R+ + +E+A++ QA+R+ E S +++LMTL DF Sbjct: 714 QVGQLL----PESGHP-SNGRFAVDLLERAIQRQAIRITEIEEDIS--EEQLMTLTGRDF 766 >SMb20196 [O] COG0464 ATPases of the AAA+ class Length = 311 Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 43/121 (35%), Positives = 65/121 (53%), Gaps = 5/121 (4%) Query: 1 VLILAGYSSEIDYFLMSNPGLPSRFPIQVEFPDYTIDQLLQIAELMAKERDYILMPQAIL 60 V+ILAGY+ +D F SNPG SR ++FPDY +LL IAE M + Y +A Sbjct: 177 VVILAGYADRMDRFFESNPGFRSRIAHHIDFPDYDNGELLSIAESMLSRQGYRFDSKASA 236 Query: 61 KLKQHLLLEKTESLHAFSNARYVRNSIEKAVRAQAVRLLNQYESNSP-GKQELMTLRTED 119 + ++ + + F+NAR +RN++++A QA RL ES P ++L T+ D Sbjct: 237 VMSDYIARRRRQP--HFANARSIRNALDRARLRQANRLFE--ESAGPVDAEQLSTITARD 292 Query: 120 F 120 Sbjct: 293 I 293 >MT0295_2 [O] COG0464 ATPases of the AAA+ class Length = 287 Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 46/133 (34%), Positives = 70/133 (52%), Gaps = 15/133 (11%) Query: 1 VLILAGYSSEIDYFLMSNPGLPSRFPIQVEFPDYTIDQLLQIAELMAKERDYILMPQAIL 60 V+I+AGY +++D FL +N GL SRF ++FP YT +L++IA MA++RD + A+ Sbjct: 138 VVIIAGYRADLDKFLDTNEGLRSRFTRNIDFPSYTSHELVEIAHKMAEQRDSVFEQSALH 197 Query: 61 KLK---QHLLLEKT--------ESLHAFSNARYVRNSIEKAVRAQAVRLLNQYESNSPGK 109 L+ L E T SL N R+VRN I + + L+ E G+ Sbjct: 198 DLEALFAKLAAESTPDTNGISRRSLDIAGNGRFVRN-IVERSEEEREFRLDHSEHAGSGE 256 Query: 110 ---QELMTLRTED 119 +ELMT+ +D Sbjct: 257 FSDEELMTITADD 269 >Rv0282_2 [O] COG0464 ATPases of the AAA+ class Length = 287 Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 46/133 (34%), Positives = 70/133 (52%), Gaps = 15/133 (11%) Query: 1 VLILAGYSSEIDYFLMSNPGLPSRFPIQVEFPDYTIDQLLQIAELMAKERDYILMPQAIL 60 V+I+AGY +++D FL +N GL SRF ++FP YT +L++IA MA++RD + A+ Sbjct: 138 VVIIAGYRADLDKFLDTNEGLRSRFTRNIDFPSYTSHELVEIAHKMAEQRDSVFEQSALH 197 Query: 61 KLK---QHLLLEKT--------ESLHAFSNARYVRNSIEKAVRAQAVRLLNQYESNSPGK 109 L+ L E T SL N R+VRN I + + L+ E G+ Sbjct: 198 DLEALFAKLAAESTPDTNGISRRSLDIAGNGRFVRN-IVERSEEEREFRLDHSEHAGSGE 256 Query: 110 ---QELMTLRTED 119 +ELMT+ +D Sbjct: 257 FSDEELMTITADD 269 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.135 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 8,151,203 Number of extensions: 262285 Number of successful extensions: 1361 Number of sequences better than 1.0e-05: 15 Number of HSP's gapped: 1347 Number of HSP's successfully gapped: 16 Length of query: 122 Length of database: 38,378,431 Length adjustment: 88 Effective length of query: 34 Effective length of database: 28,229,039 Effective search space: 959787326 Effective search space used: 959787326 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 109 (46.6 bits)