BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0476.0010.p (211 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH2363 [O] COG0464 ATPases of the AAA+ class 161 7e-40 SMb20196 [O] COG0464 ATPases of the AAA+ class 131 7e-31 BH2289 [O] COG0464 ATPases of the AAA+ class 107 9e-24 all4233 [O] COG0464 ATPases of the AAA+ class 102 5e-22 ML2537_2 [O] COG0464 ATPases of the AAA+ class 101 9e-22 >BH2363 [O] COG0464 ATPases of the AAA+ class Length = 315 Score = 161 bits (407), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 73/118 (61%), Positives = 95/118 (80%) Query: 58 FQELNRELDALVGLENIKELVFEIYALLQIAKMRSDAGLASGGQAYHMVFKGNPGTGKTT 117 +++ REL VGL+ +K L+ E+YA + I + R++ GL + QA HM+FKGNPGTGKTT Sbjct: 43 LEKMERELKKYVGLDEVKRLIKEVYAWIYINQCRTEQGLRASKQALHMIFKGNPGTGKTT 102 Query: 118 VARIVAKLFQRMGVLTKGHLIEVERADLVGEYIGHTAQKTRDLVKKALGGILFIDEAY 175 VAR++A+ F+ M VL+KG LIE ERADLVGEYIGHTAQKTR+L+KKA GG+LF+DEAY Sbjct: 103 VARLIARFFRDMNVLSKGQLIEAERADLVGEYIGHTAQKTRELIKKAQGGVLFVDEAY 160 >SMb20196 [O] COG0464 ATPases of the AAA+ class Length = 311 Score = 131 bits (330), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 66/124 (53%), Positives = 88/124 (70%), Gaps = 3/124 (2%) Query: 52 NGHSEWFQELNRELDALVGLENIKELVFEIYALLQIAKMRSDAGLASGGQAYHMVFKGNP 111 +G +E EL+REL VGL+ +K+ + E ALL + + R GL+ + HM F GNP Sbjct: 26 SGVAEILDELDREL---VGLKPVKQRIRETAALLLVERARRAMGLSHEPPSLHMSFTGNP 82 Query: 112 GTGKTTVARIVAKLFQRMGVLTKGHLIEVERADLVGEYIGHTAQKTRDLVKKALGGILFI 171 GTGKTTVA +A L R+G + KGHL+ V R DLVG+YIGHTA KT++++KKA+GG+LFI Sbjct: 83 GTGKTTVALRMANLLHRLGYIRKGHLVSVTRDDLVGQYIGHTAPKTKEILKKAMGGVLFI 142 Query: 172 DEAY 175 DEAY Sbjct: 143 DEAY 146 >BH2289 [O] COG0464 ATPases of the AAA+ class Length = 775 Score = 107 bits (268), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 49/111 (44%), Positives = 78/111 (70%) Query: 65 LDALVGLENIKELVFEIYALLQIAKMRSDAGLASGGQAYHMVFKGNPGTGKTTVARIVAK 124 L+ L+GL ++K + ++ + ++ +MR D G+ + H +F GNPGTGKTTVA++ A+ Sbjct: 515 LEQLIGLADVKRELKQLTSFAKVQQMRRDKGMTTIPIQLHSIFSGNPGTGKTTVAKLFAE 574 Query: 125 LFQRMGVLTKGHLIEVERADLVGEYIGHTAQKTRDLVKKALGGILFIDEAY 175 Q +G+L +GH+ V R+DLV ++G TA KT++ ++ ALGG+LFIDEAY Sbjct: 575 ALQEIGLLKRGHVSIVSRSDLVAGFVGQTALKTKERIRDALGGVLFIDEAY 625 Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 53/136 (38%), Positives = 82/136 (60%), Gaps = 14/136 (10%) Query: 54 HSEWFQELNR-------------ELDALVGLENIKELVFEIYALLQIAKMRSDAGLASGG 100 H EW Q + + EL+ +VGLE++K V Y L+ R AG Sbjct: 215 HREWTQVIAQMEEEAQHPSSPLDELEKMVGLEDVKRRVHHHYQFLKYQAERKKAGYQFLD 274 Query: 101 Q-AYHMVFKGNPGTGKTTVARIVAKLFQRMGVLTKGHLIEVERADLVGEYIGHTAQKTRD 159 + + HM+ GNPGTGKT +AR+ A+L+ +G+L + ++EV+R+ LVG ++G + + T+ Sbjct: 275 EMSLHMILTGNPGTGKTRLARLFAQLYYELGLLERNEVLEVDRSQLVGGFVGQSEENTKA 334 Query: 160 LVKKALGGILFIDEAY 175 L++KA GG+LFIDEAY Sbjct: 335 LIEKAAGGVLFIDEAY 350 >all4233 [O] COG0464 ATPases of the AAA+ class Length = 490 Score = 102 bits (253), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 60/179 (33%), Positives = 91/179 (50%), Gaps = 7/179 (3%) Query: 19 PSRQINIVLRNQDTPXXXXXXXXXXXXXXPPKNNGHSEWFQELNRELDALVGLENIKELV 78 P + V + DT PP+ + F +L ALVG E K + Sbjct: 184 PDTEKESVDSHSDTRDSKQETKASFVEHDPPEKDTVEAVFADLK----ALVGHEQTKHQL 239 Query: 79 FEIYALLQIAKMRSDAGLASGGQAYHMVFKGNPGTGKTTVARIVAKLFQRMGVLTKGHLI 138 F + L++ R GL + H++ G PGTGKTT+AR+V +L+++MG +GH++ Sbjct: 240 FSLANYLKVQTERRKRGLKIVDTSLHLMLYGPPGTGKTTIARLVGRLYKQMGFFPRGHVV 299 Query: 139 EVERADLVGEYIGHTAQKTRDLVKKALGGILFIDEAYXXXXLTVSPGAG---IRILAKR 194 E +RA ++G YIG TA + V +A+GG+LFIDEA+ G ++IL KR Sbjct: 300 ETDRAGIIGGYIGQTALRMESAVHQAIGGVLFIDEAHALAAEDTPSDFGKEALQILIKR 358 >ML2537_2 [O] COG0464 ATPases of the AAA+ class Length = 288 Score = 101 bits (251), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 48/107 (44%), Positives = 74/107 (69%) Query: 69 VGLENIKELVFEIYALLQIAKMRSDAGLASGGQAYHMVFKGNPGTGKTTVARIVAKLFQR 128 +GL+ +K V + + + + +R GL +A+H+VF G PGTGKTT+AR+VAK++ Sbjct: 1 IGLDEVKNQVSRLKSSVAMELVRKQRGLMVAQRAHHLVFAGPPGTGKTTIARVVAKVYCG 60 Query: 129 MGVLTKGHLIEVERADLVGEYIGHTAQKTRDLVKKALGGILFIDEAY 175 +G+L K ++ EV RADL+G++IG T KT ++ AL G+LF+DEAY Sbjct: 61 LGLLKKENIREVHRADLIGQHIGETEAKTNAVIDSALDGVLFLDEAY 107 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.135 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 14,198,821 Number of extensions: 575069 Number of successful extensions: 3024 Number of sequences better than 1.0e-05: 15 Number of HSP's gapped: 3075 Number of HSP's successfully gapped: 16 Length of query: 211 Length of database: 38,378,431 Length adjustment: 102 Effective length of query: 109 Effective length of database: 26,614,363 Effective search space: 2900965567 Effective search space used: 2900965567 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 113 (48.1 bits)