BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0476.0009.p
         (177 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L171552 [S] COG1434 Uncharacterized conserved protein                  63   3e-10
alr2467 [S] COG1434 Uncharacterized conserved protein                  62   4e-10
CAC0352 [S] COG1434 Uncharacterized conserved protein                  60   2e-09
STM0098 [S] COG1434 Uncharacterized conserved protein                  60   3e-09
BMEII0841 [S] COG1434 Uncharacterized conserved protein                59   4e-09

>L171552 [S] COG1434 Uncharacterized conserved protein
          Length = 310

 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 15/155 (9%)

Query: 5   LWPDQQRSNDESYAGSGCGHYSWYGDVGRQAQPRTTXXXLDYGLELYREGKFPRFIVSGG 64
           + P Q++ +     GSG         V  +  P      LD G+E Y++    +F+VSGG
Sbjct: 159 MIPLQKKIDYIIILGSG---------VRSEEVPPLLKSRLDKGIEYYQKNPTAKFVVSGG 209

Query: 65  LDRVDYKYTEAEGMKNYLVEQGVPENAIILEDKSTSTYENLRFSQKLM----KSKDLNTA 120
               D   +EA  M+ YL  Q +P + I+ EDK T+TYEN+ FS++++      K++  +
Sbjct: 210 -QGADEPVSEAFAMRKYLHSQNIPNHQILFEDKFTTTYENMLFSKRIINEDWSDKEMPPS 268

Query: 121 VII-THTFHGQRALEIARELNYNRPELGLTDSQVM 154
           +I  T+ +H  R    A+ +      +G T S + 
Sbjct: 269 IIFSTNNYHVLRGSLYAQRVKLKAQGVGGTHSTLF 303


>alr2467 [S] COG1434 Uncharacterized conserved protein
          Length = 359

 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 5/93 (5%), Positives = 16/93 (17%), Gaps = 5/93 (5%)

Query: 46  YGLELYREGKFPRFIVSGGLDRVDYK---YTEAEGMKNYLVEQGVPENAIILEDKSTSTY 102
                  E       +  G                       + V +   I+   + +  
Sbjct: 108 LEEASLDEPVTVWMKLDTG--MHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADE 165

Query: 103 ENLRFSQKLMKSKDLNTAVIITHTFHGQRALEI 135
                ++K +   +                  +
Sbjct: 166 PKCGATEKQLAIFNTFCEGKPGQRSIAASGGIL 198


>CAC0352 [S] COG1434 Uncharacterized conserved protein
          Length = 225

 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 55/86 (63%), Gaps = 2/86 (2%)

Query: 47  GLELYREGKFPRFIVSGGLDRVDYKYTEAEGMKNYLVEQGVPENAIILEDKSTSTYENLR 106
            ++L+ +G   + I SGG   V  KY E++ M N+    G+P   +I EDKS +TY+N++
Sbjct: 75  AVKLFNKGYANKIICSGG--GVYNKYIESDVMANFAKSLGIPNGCLIKEDKSRNTYQNIQ 132

Query: 107 FSQKLMKSKDLNTAVIITHTFHGQRA 132
            S K+M++K  ++A+++T  +H +R+
Sbjct: 133 NSIKIMENKHWSSAIVVTSPWHLRRS 158


>STM0098 [S] COG1434 Uncharacterized conserved protein
          Length = 206

 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 64/117 (54%), Gaps = 2/117 (1%)

Query: 22  CGHYSWYGDVGRQAQPRTTXXXLDYGLELYREGKFPRFIVSGGLDRVDYKYTEAEGMKNY 81
           C   +  G  G+   P      LD+ + LY++      +++GG        ++A   + Y
Sbjct: 42  CAIVAGAGVSGKTPSP-VFQARLDHAIWLYQQHIVRALVLTGGYG-AGATVSDAAIARQY 99

Query: 82  LVEQGVPENAIILEDKSTSTYENLRFSQKLMKSKDLNTAVIITHTFHGQRALEIARE 138
           ++E+G+P  AI +E++ST T EN+R+++++++ +   TA++++   H  R   IA++
Sbjct: 100 VLEKGIPAKAIFIEERSTVTRENIRYAKQILRQQQWRTALLVSDPLHMLRLKTIAQD 156


>BMEII0841 [S] COG1434 Uncharacterized conserved protein
          Length = 180

 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 60/105 (57%), Gaps = 11/105 (10%)

Query: 49  ELYREGKFPRFIVSGGLDRVDYKYTEAEGMKNYLVEQGVPENAIILEDKSTSTYENLRFS 108
           +L+++G+ P  + +G  D +  K+         ++ +GVP +AI++E +S ST++N RFS
Sbjct: 27  QLWKDGRSPYILATGDGDCLLNKH--------IMMAKGVPPSAILVECRSGSTWQNARFS 78

Query: 109 QKLMKSKDLNTAVIITHTFHGQRALEIARELNYNRPELGLTDSQV 153
             L++     +A+I+T+ FH +RA+   R      P++  T S V
Sbjct: 79  APLLRRLHAKSALIVTNWFHSRRAVASFRTAC---PQMHFTSSPV 120


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.317    0.134    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 13,021,880
Number of extensions: 535398
Number of successful extensions: 1499
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 1498
Number of HSP's successfully gapped: 20
Length of query: 177
Length of database: 38,378,431
Length adjustment: 99
Effective length of query: 78
Effective length of database: 26,960,365
Effective search space: 2102908470
Effective search space used: 2102908470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)