BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0472.0052.p
         (182 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L130713 [K] COG1309 Transcriptional regulator                          86   3e-17
DR0720 [K] COG1309 Transcriptional regulator                           59   4e-09

>L130713 [K] COG1309 Transcriptional regulator
          Length = 191

 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 77/151 (50%)

Query: 1   VLAAAEIADEQGIEEVTLAAIAARLGVRSPSLYNHINGLQGLRSLLAVHGLELLNAAIAA 60
           V A  E+A + G+  V+   +A   G+++PSLYNH   ++ +R   AV+  + LN  +  
Sbjct: 12  VQATIELAGKIGLSNVSFPRLAEYFGIKAPSLYNHFKNMEEVRVATAVYLQKELNCELTH 71

Query: 61  ASEGLKGDAAIHAMGQAYVDFARKHPGLYETTLRAPEEGNSELVRASEQVLSLIIRLLSC 120
           A  GL   AA+ A  ++Y  FA K+  +YE      +  N EL   +++ + L+ R L  
Sbjct: 72  AMVGLTPLAALRAYAESYKRFAEKYEAVYELINVIHQTNNGELEYLAKENIRLVRRSLEN 131

Query: 121 YELDAEDELHAVRGLRSLLHGFAALENKGGF 151
           + L  E+  H  R  RS LHGF  L   G F
Sbjct: 132 FHLSEEENFHISRMFRSTLHGFITLTQLGYF 162


>DR0720 [K] COG1309 Transcriptional regulator
          Length = 215

 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 78/152 (51%), Gaps = 3/152 (1%)

Query: 3   AAAEIADEQGIEEVTLAAIAARLGVRSPSLYNHINGLQGLRSLLAVHGLELLNAAIAAAS 62
           AA ++ +EQG E +T+  +A RL VR  SLY H    + L   +       L  A+  A+
Sbjct: 38  AAQQLVEEQGAEALTMRTLAERLEVRPSSLYRHFAHREALLWAIGEQAARGLQQALQDAA 97

Query: 63  EGLKGDAAIHAMGQAYVDFARKHPGLYETTLRAPEEGNSELVRAS--EQVLSLIIRLLSC 120
            G     A+ A  +AY+ +AR+HP LY   L  P E   E + AS  + + + ++ L+  
Sbjct: 98  AGQPARPALDAAARAYLAYARQHPHLYALLLTTPPELTPEQLAASAGKHLWNTLLALVGS 157

Query: 121 YELDAEDELHAVRGLRSLLHGFAALENKGGFG 152
              + +D  +AV  L + LHG+A LE  G FG
Sbjct: 158 LSGNPDDTPNAV-ALWTFLHGYAELERSGMFG 188


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.317    0.134    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 13,125,634
Number of extensions: 482385
Number of successful extensions: 1072
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1075
Number of HSP's successfully gapped: 3
Length of query: 182
Length of database: 38,378,431
Length adjustment: 100
Effective length of query: 82
Effective length of database: 26,845,031
Effective search space: 2201292542
Effective search space used: 2201292542
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)