BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0472.0034.p (456 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_yurO [G] COG1653 ABC-type sugar transport system, periplasmic... 112 1e-24 PH1214 [G] COG1653 ABC-type sugar transport system, periplasmic ... 96 1e-19 SMa2305 [G] COG1653 ABC-type sugar transport system, periplasmic... 84 4e-16 PAE1324 [G] COG1653 ABC-type sugar transport system, periplasmic... 80 7e-15 PH0753 [G] COG1653 ABC-type sugar transport system, periplasmic ... 79 1e-14 >BS_yurO [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 422 Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 84/325 (25%), Positives = 154/325 (47%), Gaps = 12/325 (3%) Query: 45 TNSGTATNTTKSDKKVTITFQNIYPDPTTPSYKMVHELSEQYEKEHPNIKIELDTLNTDQ 104 T +G ++ ++ +D KVT+ F + +P SY E+ +++EK+HP+I I+++ + D Sbjct: 17 TIAGCSSQSSSADGKVTLKFFHRWPKEPEKSY--FEEVVKEFEKDHPDIDIQIEAVLNDS 74 Query: 105 QKVKLKTQAASKEVPDITIVNPAAQMKPFVDAGLFAPLNDML--DQNGLKDTYQTGLLDY 162 K K+K + PDI F+ L+ D + Q+ + Sbjct: 75 YKDKIKVMLGTTSPPDIYFSWSDEFAFKFIRGNKALDLSSYYKNDTDWSSQLVQSQITP- 133 Query: 163 YSFDGNVYALPDGNNIEVVFYNKDLFAQAGIANTPTTFEEMLKDVKILKDKGITPLAIGE 222 ++++ Y +P + + FYNKD+F + + + P T++E++ K LK+ G TP++ G Sbjct: 134 FTYENKQYGVPWQMDAKSFFYNKDIFQKLNL-DPPKTWDELIDVSKKLKEHGYTPISFGT 192 Query: 223 KDSWTGSFLFMNILLRTNGGPGFLQDVMDGKKTFEDPAFVEAVDAFQQLVQAGAFPDGAT 282 K +WT S + R +D F D +V+A++ Q+L+ F Sbjct: 193 KATWTISHYIGTLNQRMVDEKTREKDYNAKTGEFTDEGYVKALEKLQELM--PYFNKHVN 250 Query: 283 SIDANAGGNIFKSGKAAMWVIGSWETGAVDASSVAGKVGAFQFPTVNGKGDPNEFMLAPG 342 S+D FKSGK+AM + E V+ + +G F FP ++G+ +E + Sbjct: 251 SVDHEYVRQQFKSGKSAMIYAETAEIKLVEPVN----LGMFPFPEISGQKGSSEALTGAP 306 Query: 343 SAFAVSANSEHLQETKDFLNFFASN 367 F +S+ ++H +E +FL F S Sbjct: 307 EGFMISSRTKHPKEAMEFLQFLTSK 331 >PH1214 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 441 Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 71/290 (24%), Positives = 145/290 (50%), Gaps = 15/290 (5%) Query: 82 LSEQYEKEHPNIKIELDTLNTD---QQKVKLKTQAASKEVPDITIVNPAAQMKPFVDAGL 138 L++++EK++PNIKI+ + ++ K+ L++ + + PD V+ +M ++ A Sbjct: 62 LAKKFEKKYPNIKIKANPVSGGGGVNLKMVLQSLMLAGKPPDTFQVHAGYEMARYIKANQ 121 Query: 139 FAPLNDMLDQNGLKDTYQTGLLDYYSFDGNVYALP-DGNNIEVVFYNKDLFAQAGI-ANT 196 P++D+ ++ +K Y + F+ + YA+P + + V++YNK +F + GI ++ Sbjct: 122 LTPIDDIWTED-MKKNYPKVIQQMVIFNNHYYAVPINVHRANVIWYNKQIFKKYGIDPSS 180 Query: 197 PTTFEEMLKDVKILKDKGITPLAIGEKDSWTGSFLFMNILLRTNGGPGFLQDVMDGKKTF 256 T +++ + LK+ G+TP A+G+++ W + +F ++L GG + + ++G+ + Sbjct: 181 IKTIDDLFAVAEKLKENGVTPFALGDRNKWPATQVF-EVMLVAVGGVDYYEKFINGEISA 239 Query: 257 EDPAFVEAVDAFQQLVQAGAFPDGATSIDANAGGNIFKSGKAAMWVIGSWETGAVDASSV 316 DP + ++ F + V+ PD A A ++K G+AAM ++G W G A Sbjct: 240 NDPTLKKVLEYFVKYVEYSN-PDHAAKTWDEACALVYK-GEAAMTLMGDWANGYFKAKGW 297 Query: 317 AGKVGAFQFPTVNGKGDPNEFMLAPGSAFAVSANSEHLQETKDFLNFFAS 366 V P G D ++ F + A + H K +L+F + Sbjct: 298 KPNVDYGAIPIPAGVYD---LVI---DTFVLPAKAAHPNAAKKWLSFIGT 341 >SMa2305 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 459 Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 64/272 (23%), Positives = 124/272 (45%), Gaps = 9/272 (3%) Query: 94 KIELDTLNTDQQKVKLKTQAASKEVPDITIVNPAAQMKPFVDAGLFAPLNDMLDQNGLKD 153 K+ ++ ++ + K ++ + PD+ +M+ FV GLF ++D+ ++ D Sbjct: 106 KVVVNNMDHEAHKTAIRNYLVAG-APDVCFWFSGNRMRAFVTRGLFDDISDLFEKEKYAD 164 Query: 154 TYQTGLLDYYSFDGNVYALPDGNNIEVVFYNKDLFAQAGIANTPTTFEEMLKDVKILKDK 213 + +G Y LP G + +FY KD+F + G+ PT+++++L + K Sbjct: 165 VL-GATAGSVTVEGKQYGLPTGGTLWGMFYRKDVFDEHGL-KVPTSWDDLLAFGEKCKSA 222 Query: 214 GITPLAIGEKDSWTGSFLFMNILLRTNGGPGFLQDVMDGKKTFEDPAFVEAVDAFQQLVQ 273 +TP+A+G KD W + F + LR NG +M+G+ + D + +++L++ Sbjct: 223 SLTPVAMGTKDLWPAAGWFDQMNLRINGLDKHFA-LMNGEMAYTDETLKPVFEHWEELIK 281 Query: 274 AGAFPDGATSIDANAGGNIFKSGKAAMWVIGSWETGAVDASSVAGKVGAFQFPTV-NGKG 332 G F TS G +A M +G++ A + A FP + +G G Sbjct: 282 QGFFTPDHTSFGWQEAGAFLAQKRAGMMNLGAFVRAAFPRQDLPQLTFA-PFPVIEDGLG 340 Query: 333 DPNEFMLAPGSAFAVSANSEHLQETKDFLNFF 364 EF L ++ + N+++ ++FL F Sbjct: 341 RYEEFSL---NSVHIPTNAKNKPGAREFLTHF 369 >PAE1324 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 437 Score = 80.1 bits (196), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 69/271 (25%), Positives = 127/271 (46%), Gaps = 17/271 (6%) Query: 75 SYKMVHELSEQYEKEHPNIKIELDTLNTDQQKVKLKTQAASKEVP-DITIVNPAAQMKPF 133 Y+ ++ ++Y+K +PN++ E T ++ L TQ +K+ P D+ I + + Sbjct: 75 EYEYFKQVLDEYQKINPNVEFEYVTRRAEEIAQILPTQLEAKQAPADVVITSFGWFVVEM 134 Query: 134 VDAGLFAPLNDMLDQNGLKDTYQTGLLDYYSFDGNVYALPDGNNIEVVF-YNKDLFAQAG 192 G L ++++ N Y TG+ D +++G ++A P ++ F Y K F Q G Sbjct: 135 AKRGHVVDLTNVINPN----EYVTGIFDPVTYEGKIWATPFTIVLKPGFWYRKSFFQQHG 190 Query: 193 IANTPTTFEEMLKDVKILKDKGITPLAIGEKDSWTGSFLFMNILLRTNGGPGFLQDVMDG 252 ++ P T++E L+ +K LK+ G+TP+A G+ W S + ++ GP + + + Sbjct: 191 LSE-PQTWDEFLQLLKRLKEIGVTPIASGDGVGWPLSDVTEAFII-AYAGPDVFRGLTEK 248 Query: 253 KKTFEDPAFVEAV--DAFQQLVQAGAFPDGATSIDANAGGNIFKSGKAAMWVIGSWETGA 310 K F+DP + AV D L++ G F + A + +G ++ +G+W G Sbjct: 249 KVKFDDPR-INAVFRDRISLLLREGYFGEPEEWTQAVEK---WWNGTYGIYFMGTWILGM 304 Query: 311 VDASSVAGKVGAFQFPTVNGKGDPNEFMLAP 341 VD VG F P G +++ P Sbjct: 305 VDNPD---DVGFFPMPETKGITGGTDYIFVP 332 >PH0753 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 464 Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 66/241 (27%), Positives = 115/241 (47%), Gaps = 19/241 (7%) Query: 77 KMVHELSEQYEKEHPNIKIELDTLNTDQQKVKLKTQAASKEVPDITIVNPAAQMKPFVDA 136 K + E +EKE+PNIK++ + + + L + A PD+ V+ ++ F++ Sbjct: 83 KNYQRMIELFEKENPNIKVKYEVITQMFHENILASFGAGV-APDVFYVD-SSWAPIFIEK 140 Query: 137 GLFAPLNDMLDQNGLKDTYQTGLLDYYSFDGNVYALPDGNNIEVVFYNKDLFAQAGIANT 196 G P++++ D++ + Y LL+ + +G +Y LP ++ +FYNK LF QAG+ Sbjct: 141 GALYPISELADESFINKFYPF-LLEPFKKNGKLYGLPKDWSMLALFYNKKLFEQAGLTKP 199 Query: 197 PTTFEEMLKDVKILKDKGITP-LAIGEKDSWTGSFLFMNILLRTNGGPGFLQDVMDGKKT 255 P T++E+L+ KI+ +K P LAI + G F + +NG P + + Sbjct: 200 PETWDELLEYAKIITEKTGKPGLAI-----YLGGFNRYVPVAVSNGAPKPWFEKPEDASW 254 Query: 256 FEDPAFVEAVDAFQQLVQAGAF--------PDGATSIDANAG--GNIFKSGKAAMWVIGS 305 F++P E + + L + G P D AG G+ F K AM + G+ Sbjct: 255 FDNPVVRETLTWYINLYRKGKVEREKKGLPPYVVAPEDVGAGWLGDAFGQQKVAMVISGN 314 Query: 306 W 306 W Sbjct: 315 W 315 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.314 0.131 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 31,898,212 Number of extensions: 1438695 Number of successful extensions: 2382 Number of sequences better than 1.0e-05: 59 Number of HSP's gapped: 2348 Number of HSP's successfully gapped: 59 Length of query: 456 Length of database: 38,378,431 Length adjustment: 110 Effective length of query: 346 Effective length of database: 25,691,691 Effective search space: 8889325086 Effective search space used: 8889325086 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 117 (49.7 bits)