BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0472.0032.p (274 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_yurM [G] COG0395 ABC-type sugar transport system, permease co... 154 1e-37 BH1246 [G] COG0395 ABC-type sugar transport system, permease com... 148 1e-35 AGc4555 [G] COG0395 ABC-type sugar transport system, permease co... 144 2e-34 BMEII0752 [G] COG0395 ABC-type sugar transport system, permease ... 144 2e-34 SP1681 [G] COG0395 ABC-type sugar transport system, permease com... 137 2e-32 >BS_yurM [G] COG0395 ABC-type sugar transport system, permease component Length = 300 Score = 154 bits (389), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 79/242 (32%), Positives = 142/242 (58%), Gaps = 2/242 (0%) Query: 33 KTNEEIMDGSFFSFPKSFQWHNYSEAYTSGSYLKYLSNSVFVTGVTMICVIVLASMVAYA 92 K +++I + S+ S P S+ N+ A+ G Y NSV VT +T + + +++ AY Sbjct: 61 KNSDDIFEHSW-SLPSSWHPENFVSAWNQG-ISSYFMNSVIVTALTCVITVFISAWAAYG 118 Query: 93 ISRFRWKYGNVVMTIFLMGMMIPMQATLLPLMIIFKNIHVLNTHLSLILPYIAFSTPIAV 152 +SRF +K + + L G+M+ Q +L+PL I +++ + NT+ +LILPY A+ P + Sbjct: 119 LSRFEFKGKGFFLVLCLGGLMLTPQVSLVPLYSIIQSLGLYNTYWALILPYAAYRIPFTI 178 Query: 153 FILSGFMRDIPHEIEESAFIDGASVYRIFRSIILPVSIPPVMTVCILTFINIWNEYILAA 212 ++ + I E+EE+A++DG + + +F I LP+S+P ++T ILT + WNE++ A Sbjct: 179 ILIRSYFLSISKELEEAAYLDGCTSFGVFFRIFLPMSVPILVTSGILTAYHTWNEFMFAI 238 Query: 213 TFISSEKLKTLPFGVYTFVSQYSVNYGNIGAFLVMGALPVILIYFFLSNKITKGMVAGAV 272 FI E L+T+P G+ F ++G + A L + A P+I+++ + +G+ +G+V Sbjct: 239 IFIDDENLRTIPAGLMQFRDALQTDWGVLLAGLTISAAPIIILFLLMQKYFVRGIASGSV 298 Query: 273 KG 274 KG Sbjct: 299 KG 300 >BH1246 [G] COG0395 ABC-type sugar transport system, permease component Length = 273 Score = 148 bits (373), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 83/242 (34%), Positives = 142/242 (58%), Gaps = 3/242 (1%) Query: 33 KTNEEIMDG-SFFSFPKSFQWHNYSEAYTSGSYLKYLSNSVFVTGVTMICVIVLASMVAY 91 K EI ++FS +FQ +Y A + Y+ NS ++ +T + I AS+ AY Sbjct: 33 KPPREIFASFAWFSAEPTFQ--SYVNAVNNRPLFTYMMNSFVISSLTTLIAIACASLAAY 90 Query: 92 AISRFRWKYGNVVMTIFLMGMMIPMQATLLPLMIIFKNIHVLNTHLSLILPYIAFSTPIA 151 A++R K +++ L M P A + P+ ++ + N++ L++PYI S P+A Sbjct: 91 ALTRLPIKGKGLILGTVLAASMFPQIAIITPIYSFITDLGLRNSYFGLVIPYITISLPLA 150 Query: 152 VFILSGFMRDIPHEIEESAFIDGASVYRIFRSIILPVSIPPVMTVCILTFINIWNEYILA 211 ++IL+ F + IP E+EESA +DGA+ ++ FR II P++ P V T IL FI WNEY+ A Sbjct: 151 IWILATFFKKIPFELEESAKLDGATPFQTFRKIIFPLAAPGVFTTAILVFIAAWNEYLFA 210 Query: 212 ATFISSEKLKTLPFGVYTFVSQYSVNYGNIGAFLVMGALPVILIYFFLSNKITKGMVAGA 271 T ++++L+T+P G+ + SQY++ +G+I A V+ +P+++I +I G+ +G+ Sbjct: 211 LTINTADRLRTVPVGLSLYESQYTIPWGDITAATVIVTVPIVIIVLLFQRRIVAGLTSGS 270 Query: 272 VK 273 VK Sbjct: 271 VK 272 >AGc4555 [G] COG0395 ABC-type sugar transport system, permease component Length = 286 Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 82/240 (34%), Positives = 133/240 (55%), Gaps = 6/240 (2%) Query: 37 EIMDGSF--FSFPKSFQWHNYSEAYTSGSYLKYLSNSVFVTGVTMICVIVLASMVAYAIS 94 EI +G++ P+ F W NY + + S+ Y NSV VTG I +V+ Y I+ Sbjct: 50 EIDNGAYPPILIPERFAWSNYVKVFEENSFFLYFWNSVLVTGAATILALVIGVPAGYGIA 109 Query: 95 RFRWKYGNVVMTIFLMGMMIPMQATLLPLMIIFKNIHVLNTHLSLILPYIAFSTPIAVFI 154 R + + VV+ I M P + L+PL ++F+ +++L T I+ ++ + PI V+I Sbjct: 110 RLKAEKSAVVIMI---ARMTPGLSFLIPLFLLFQWLNLLGTLWPQIIIHLVVTVPIVVWI 166 Query: 155 LSGFMRDIPHEIEESAFIDGASVYRIFRSIILPVSIPPVMTVCILTFINIWNEYILAATF 214 + G+ P E+EE+A IDGAS +++FR + LP++ P ++ IL I WN ++ Sbjct: 167 MIGYFETTPKELEEAASIDGASSWQVFRLVALPIAKPGIVVSFILAVIFSWNNFVFGIVL 226 Query: 215 ISSEKLKTLPFGVYTFVSQYSVNYGNIGAFLVMGALPVILIYFFLSNKITKGMVAGAVKG 274 S E +TLP VY +S V++G + A ++ LPV+L+ F +I G+ AGAVKG Sbjct: 227 ASRET-RTLPVAVYNMLSFEQVSWGPLAAAALIVTLPVLLLTMFAQKQIVAGLTAGAVKG 285 >BMEII0752 [G] COG0395 ABC-type sugar transport system, permease component Length = 279 Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 80/231 (34%), Positives = 132/231 (57%), Gaps = 2/231 (0%) Query: 44 FSFPKSFQWHNYSEAYTSGSYLKYLSNSVFVTGVTMICVIVLASMVAYAISRFRWKYGNV 103 F P+SF Y GS+L Y NS VT V++ VI+ +M A+A++ +R++ GN+ Sbjct: 50 FPTPESFSLIGYETVLKQGSFLTYFQNSAIVTVVSIFLVILFGAMAAFALAEYRFR-GNM 108 Query: 104 VMTIFL-MGMMIPMQATLLPLMIIFKNIHVLNTHLSLILPYIAFSTPIAVFILSGFMRDI 162 + ++L +G+MIP++ + L+ ++NT +LIL Y A P+A+FILS FMR + Sbjct: 109 LTGLYLAIGIMIPIRLGTVALLQGMVAAGLVNTLTALILVYTAQGLPLAIFILSEFMRTV 168 Query: 163 PHEIEESAFIDGASVYRIFRSIILPVSIPPVMTVCILTFINIWNEYILAATFISSEKLKT 222 +++ + IDG S Y IF ++LP+ P + TV + T I IWN+ SE KT Sbjct: 169 SDDLKNAGRIDGMSEYAIFFKLVLPLIRPAMATVAVFTMIPIWNDLWFPLILAPSEATKT 228 Query: 223 LPFGVYTFVSQYSVNYGNIGAFLVMGALPVILIYFFLSNKITKGMVAGAVK 273 + G F+ Q+ N+ + A L + P++++Y S ++ +G+ AGAVK Sbjct: 229 VTLGAQLFIGQFVTNWNAVLAALSLAMFPILILYVLFSRQLIRGITAGAVK 279 >SP1681 [G] COG0395 ABC-type sugar transport system, permease component Length = 279 Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 79/248 (31%), Positives = 130/248 (52%), Gaps = 13/248 (5%) Query: 38 IMDGSFFSFPKSF----QW-------HNYSEAYTSGSYLKYLSNSVFVTGVTMICVIVLA 86 I+ G+F S P + QW N+ + L+++ NSVF++ VTM V + Sbjct: 34 ILTGAFKSQPDTIVIPPQWFPKMPTMENFQQLMVQNPALQWMWNSVFISLVTMFLVCATS 93 Query: 87 SMVAYAISRFRWKYGNVVMTIFLMGMMIPMQATLLPLMIIFKNIHVLNTHLSLILPYIAF 146 S+ Y +++ R+ ++ IF+ M +P Q L+PL+ I + + +T ++ILP I + Sbjct: 94 SLAGYVLAKKRFYGQRILFAIFIAAMALPKQVVLVPLVRIVNFMGIHDTLWAVILPLIGW 153 Query: 147 STPIAVFILSGFMRDIPHEIEESAFIDGASVYRIFRSIILPVSIPPVMTVCILTFINIWN 206 P VF++ F +IP E+ ESA IDG R F S+ P+ P + I TFIN WN Sbjct: 154 --PFGVFLMKQFSENIPTELLESAKIDGCGEIRTFWSVAFPIVKPGFAALAIFTFINTWN 211 Query: 207 EYILAATFISSEKLKTLPFGVYTFVSQYSVNYGNIGAFLVMGALPVILIYFFLSNKITKG 266 +Y + ++S T+ GV T ++ + NYG I A + A+P++ ++ T+G Sbjct: 212 DYFMQLVMLTSRNNLTISLGVATMQAEMATNYGLIMAGAALAAVPIVTVFLVFQKSFTQG 271 Query: 267 MVAGAVKG 274 + GAVKG Sbjct: 272 ITMGAVKG 279 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.330 0.142 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,291,264 Number of extensions: 592986 Number of successful extensions: 2351 Number of sequences better than 1.0e-05: 202 Number of HSP's gapped: 2206 Number of HSP's successfully gapped: 203 Length of query: 274 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 169 Effective length of database: 26,268,361 Effective search space: 4439353009 Effective search space used: 4439353009 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 115 (48.9 bits)