BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0472.0029.p (235 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_yesM [T] COG2972 Predicted signal transduction protein with a... 151 8e-37 BH0792 [T] COG2972 Predicted signal transduction protein with a ... 128 9e-30 SP0662 [T] COG2972 Predicted signal transduction protein with a ... 125 5e-29 BH2727 [T] COG2972 Predicted signal transduction protein with a ... 120 2e-27 BH2110 [T] COG2972 Predicted signal transduction protein with a ... 119 5e-27 >BS_yesM [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain Length = 577 Score = 151 bits (382), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 85/230 (36%), Positives = 131/230 (56%), Gaps = 13/230 (5%) Query: 1 MVRRIEELIERVKLSSVSEKNAELHALQSQVNPHFLYNTLDMIYWMLDEEGNEQLGELVL 60 M++RI EL+E + K EL ALQ+Q+NPHFLYNTL+ I W+ +Q+ ++V Sbjct: 359 MMKRINELMEENVEKQLIIKETELKALQAQINPHFLYNTLESINWLAKANQQKQISKMVE 418 Query: 61 SLSSMFRYSSQWEDAAAVTLREELEQIGHYLKIISIRLEGRLKIVMDIDERWLNIRVPKM 120 SL + R S + VT++EE + + HY+ I R E RLK +DID+ + +PK+ Sbjct: 419 SLGFLLRNSIHMK-KDIVTIQEEADIVRHYMTIQRFRFEERLKFTLDIDDEVKHCLIPKL 477 Query: 121 TVQPVIENAVKHGLESLSRQGILKVYTREEESILKLIVEDNGEGMSTXXXXXXXXXXXXD 180 T+QP+ ENA+++ LE +R +++ ++ + + + VEDNG GM Sbjct: 478 TLQPLAENAIQYALEPFTRPCAIRIQAKKAKGCVCITVEDNGPGMDGRILEST------- 530 Query: 181 SPKEGGKGGIGLQNLHRRLQHMFGEEYGLQIQSFPGEGTQVAIVLPIRLE 230 GG+ GIGL N+ R+ FGE YGL+I S +GT++ I +P R E Sbjct: 531 ----GGR-GIGLWNIRERISLTFGEPYGLRIHSEHEKGTRIVITIPCRNE 575 >BH0792 [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain Length = 587 Score = 128 bits (321), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 123/223 (55%), Gaps = 5/223 (2%) Query: 5 IEELIERVKLSSVSEKNAELHALQSQVNPHFLYNTLDMIYWMLDEEGNEQLGELVLSLSS 64 +E+ IE+V S + + AEL LQSQ+NPHFLYNTL+ I EG ++++ LS Sbjct: 356 LEDYIEKVYFSKLKQTEAELANLQSQINPHFLYNTLEAIRMKSLSEGGRTTAKMIVQLSY 415 Query: 65 MFRYSSQWEDAAAVTLREELEQIGHYLKIISIRLEGRLKIVMDIDERWLNIRVPKMTVQP 124 +FRYS + A VT+ +EL+ + Y+++ +IR +L + ++E+ + VP +QP Sbjct: 416 LFRYS--LKSADLVTIGDELQHVEQYVELFNIRFPNQLTFQVAVEEKHKHYVVPPFILQP 473 Query: 125 VIENAVKHGLESLSRQGILKVYTREEESILKLIVEDNGEGMSTXXXXXXXXXXXXDSPKE 184 +IEN + HG + + + +E+E L++ + DNG+G+ S E Sbjct: 474 LIENFLIHGFKRERDDNQINIIIQEKEQTLQIQIMDNGKGIPRKKVEEINERL---SMTE 530 Query: 185 GGKGGIGLQNLHRRLQHMFGEEYGLQIQSFPGEGTQVAIVLPI 227 IGL N+++RL+ +GE +G+ +QS P T V I P+ Sbjct: 531 NSSHSIGLFNVNQRLRLRYGERFGVSVQSEPDVCTIVTIRTPM 573 >SP0662 [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain Length = 563 Score = 125 bits (314), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 134/226 (59%), Gaps = 12/226 (5%) Query: 1 MVRRIEELIERVKLSSVSEKNAELHALQSQVNPHFLYNTLDMIYWMLDEEGNEQLGELVL 60 M+ +I++L+ ++ + + +L AL SQ+NPHFLYNTLD I WM + ++++ ++ Sbjct: 343 MLDQIDQLMVAIRSQEETTRQYQLQALSSQINPHFLYNTLDTIIWMAEFHDSQRVVQVTK 402 Query: 61 SLSSMFRYS-SQWEDAAAVTLREELEQIGHYLKIISIRLEGRLKIVMDIDERWLNIRVPK 119 SL++ FR + +Q +D + L +E+ + YL I R +L+ ++ + + N+ +PK Sbjct: 403 SLATYFRLALNQGKD--LICLSDEINHVRQYLFIQKQRYGDKLEYEINENVAFDNLVLPK 460 Query: 120 MTVQPVIENAVKHGLESLSRQGILKVYTREEESILKLIVEDNGEGMSTXXXXXXXXXXXX 179 + +QP++ENA+ HG++ QG +K+ ++++S L + +ED+G G Sbjct: 461 LVLQPLVENALYHGIKEKEGQGHIKLSVQKQDSGLVIRIEDDGVGFQ---------DAGD 511 Query: 180 DSPKEGGKGGIGLQNLHRRLQHMFGEEYGLQIQSFPGEGTQVAIVL 225 S + +GG+GLQN+ +RL+ FG Y ++I S P +GT+V I + Sbjct: 512 SSQSQLKRGGVGLQNVDQRLKLHFGANYHMKIDSRPQKGTKVEIYI 557 >BH2727 [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain Length = 597 Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 72/231 (31%), Positives = 127/231 (54%), Gaps = 14/231 (6%) Query: 1 MVRRIEELIERVKLSSVSEKNAELHALQSQVNPHFLYNTLDMIYWMLDEEGNEQLGELVL 60 M+R ++E ++ V + ++ AEL ALQ Q+NPHFLYNTL + +M+ + E+ E +L Sbjct: 365 MLRELQEYVDLVVETEQKQRKAELKALQHQINPHFLYNTLTSVKFMVQQGDKEKAAETIL 424 Query: 61 SLSSMFRYSSQWEDAAAVTLREELEQIGHYLKIISIRLEGRLKIVMDIDERWLNIRVPKM 120 +L ++ + ++ +T+ +EL I Y+ I R R+K+ + L ++PK+ Sbjct: 425 ALITLLQ-NALGHINETITVEQELTIIKKYVLINQARYGERIKVHYFVSPECLPYQMPKL 483 Query: 121 TVQPVIENAVKHGLESLSRQGILKVYTREEESILKLIVEDNGEGMSTXXXXXXXXXXXXD 180 +QP IENA H ++G ++V ++ L + DNG+GM Sbjct: 484 VLQPFIENAFFHAFNK-KKEGFIQVMAAVKDEKLLFEIVDNGDGMDLEKVSL-------- 534 Query: 181 SPKEGGK----GGIGLQNLHRRLQHMFGEEYGLQIQSFPGEGTQVAIVLPI 227 S + GK GIG++N+H R+Q ++G++YG+++ S G GT V ++LP+ Sbjct: 535 SSRYHGKRQLFHGIGVRNVHERIQLLYGKDYGVEMTSNIGNGTVVHVILPL 585 >BH2110 [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain Length = 585 Score = 119 bits (297), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 73/233 (31%), Positives = 121/233 (51%), Gaps = 11/233 (4%) Query: 1 MVRRIEELIERVKLSSVS-------EKNAELHALQSQVNPHFLYNTLDMIYWMLDEEGNE 53 M + I LI V S++ EK A+L ALQSQ+NPHFL+N L+ I +G + Sbjct: 349 MSQTINRLINEVYASNIEKKDLQLREKQAQLSALQSQINPHFLFNALETIRMRSMIKGEK 408 Query: 54 QLGELVLSLSSMFRYSSQWEDAAAVTLREELEQIGHYLKIISIRLEGRLKIVMDIDERWL 113 + +++ +++ +FR S W VT+R+EL I +L+I R +++ +DIDE Sbjct: 409 ETAKIIQNMAKIFRNSLTW-GKDWVTVRDELCLIICFLEIQKYRFGDKMEYELDIDEEAY 467 Query: 114 NIRVPKMTVQPVIENAVKHGLESLSRQGILKVYTREEESILKLIVEDNGEGMSTXXXXXX 173 + +P M P +ENA HG+ES+ +GI+++ + + + + DNG GM Sbjct: 468 DYIIPNMVFLPFVENASIHGIESVKEKGIIQIRVEKNDGEIVYEISDNGAGMDEEKLASL 527 Query: 174 XXXXXXDSPKEGGKGGIGLQNLHRRLQHMFGEEYGLQIQSFPGEGTQVAIVLP 226 + E +G++N++ RL+ + + I S PG+GT V I LP Sbjct: 528 IETLKNE---ENMGENVGIKNVYYRLKLHYKNHFDFSINSRPGQGTTVQIKLP 577 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.317 0.136 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 16,709,106 Number of extensions: 652637 Number of successful extensions: 1427 Number of sequences better than 1.0e-05: 23 Number of HSP's gapped: 1380 Number of HSP's successfully gapped: 23 Length of query: 235 Length of database: 38,378,431 Length adjustment: 103 Effective length of query: 132 Effective length of database: 26,499,029 Effective search space: 3497871828 Effective search space used: 3497871828 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 114 (48.5 bits)