BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0472.0028.p (402 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SP0156 [T] COG4753 Response regulator containing CheY-like recei... 103 6e-22 BH3679 [T] COG4753 Response regulator containing CheY-like recei... 99 2e-20 BH2109 [T] COG4753 Response regulator containing CheY-like recei... 89 2e-17 BH3842 [T] COG4753 Response regulator containing CheY-like recei... 84 3e-16 BH2728 [T] COG4753 Response regulator containing CheY-like recei... 83 8e-16 >SP0156 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 428 Score = 103 bits (256), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 106/439 (24%), Positives = 194/439 (44%), Gaps = 72/439 (16%) Query: 3 ILVADDERVIREGIRRTIGQISPDHQVF-VAAKAEEAVRIMEEQRIHIVLTDILMPGMSG 61 +L+ DDE ++ EG++R I D +V A+ A+EA+ ++E + ++++D+ MP +G Sbjct: 4 VLLVDDEYMVTEGLKRLIPFDKWDMEVVATASHADEALEYVQENPVDVIISDVNMPDKTG 63 Query: 62 LEFMKISKRRYPYVKWVVISAHSEFSYAQEAVRLGARDYLLKPIGK---NKLLELI---- 114 L+ ++ K P ++++S + EF Y + A+ L DYL+KP+ K LLE I Sbjct: 64 LDMIREMKEILPDAAYILLSGYQEFDYVKRAMNLSVVDYLVKPVDKVELGNLLEKIAGQL 123 Query: 115 -------NNLTAEIEQDNDISRQGERLKASLRFLRE--GVF-----------QRLASGLD 154 L+ E+++ +S G++ + +E G F Q SG Sbjct: 124 GERGKKSQTLSQELDEAGFVSYLGDKENWWIGLSKEKQGSFTIPYYVLGQDWQIFISGHP 183 Query: 155 IGNLDIEPFIEDYK-HFYMVMVQLDAEDR----SIRLEH-------------FIVENVLS 196 + L + PF Y+ HF +L+AE S+ L+ I++ L+ Sbjct: 184 LDGLVVTPFEAPYQEHFERW--KLNAEKTLFYGSVNLQQSESLFAYYEPIYRVIIQGNLN 241 Query: 197 ELIELHGRGFVVSYDRQSLLGLITLREDAAIQ-------QFQSEVKEHLTHYLKIPFQVI 249 +++E +LL + L + QF +V HL +LK Sbjct: 242 QIVE-----------ELNLLEKVVLENTPRVSITKQLFIQFVMDVF-HLFEHLKADDMTD 289 Query: 250 HSGLSHDFSTVPQVVKRMREASASQVLELEPMKGSGEKAIDVALHYIKEHFYEDLSLEKM 309 H + ++V ++E S + E + V L I + ++LSL+ + Sbjct: 290 IVKTIHAIQSFDELVSYIKETLISFFGQYR----MNENVVSV-LEVIGRDYQKELSLKDI 344 Query: 310 ASVVFLNPAYFSQLFKQKTGQGYKEYVTSLRLEQAKXXXXXXXXXXAEIAERVGYQDMKH 369 + +F+NP Y QL K++T + E + R++ A+ +I VGY ++ + Sbjct: 345 SKALFINPVYLGQLIKRETDSTFAELLNKQRIKAAQQLLLSTSDSIEDICYAVGYSNLGY 404 Query: 370 FTQMFRKRYQLTPTEYRQQ 388 F ++FRK +P YR+Q Sbjct: 405 FYKVFRKLCGKSPKAYRKQ 423 >BH3679 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 257 Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 55/125 (44%), Positives = 78/125 (62%), Gaps = 2/125 (1%) Query: 2 NILVADDERVIREGIRRTIGQISPDH-QVFVAAKAEEAVRIMEEQRIHIVLTDILMPGMS 60 +L+ DDE R G++RT+ SP V AA A+EA+ + E+ I +++TDI MP MS Sbjct: 5 TVLIVDDEPRSRRGLKRTLEAWSPKLLNVQTAASAKEAITRLNEETIDLIITDIRMPEMS 64 Query: 61 GLEFMKISKRRYPYVKWVVISAHSEFSYAQEAVRLGARDYLLKPIGKNKLLELINN-LTA 119 GL +K + + P +VISA+SEF YA A+ LG R YLLKP+ K KL+E + + L Sbjct: 65 GLHLVKALQEQNPKPVCIVISAYSEFEYAHTALELGVRHYLLKPVKKEKLIEAVESALQM 124 Query: 120 EIEQD 124 + EQD Sbjct: 125 KKEQD 129 Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 43/110 (39%), Positives = 66/110 (60%) Query: 278 LEPMKGSGEKAIDVALHYIKEHFYEDLSLEKMASVVFLNPAYFSQLFKQKTGQGYKEYVT 337 +E + S +I ALHYI H + + L+ +A V LNP+Y S LFK+KT + EY+T Sbjct: 145 IEKERLSSSDSIHEALHYIDAHLDQKIGLKDVAKSVHLNPSYLSALFKEKTNMTFSEYLT 204 Query: 338 SLRLEQAKXXXXXXXXXXAEIAERVGYQDMKHFTQMFRKRYQLTPTEYRQ 387 RL+ AK ++IAE+ GYQ K+F ++F++ +TPT+YR+ Sbjct: 205 RKRLQHAKHLLVSTDRPISDIAEKCGYQTAKYFIKIFKEHEGMTPTQYRK 254 >BH2109 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 525 Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 102/182 (56%), Gaps = 19/182 (10%) Query: 3 ILVADDERVIREGIRRTIGQISPDHQVFVAA-KAEEAVRIMEEQRIHIVLTDILMPGMSG 61 +L+ADDE +R G++ I ++V A E+A ++++E + +V+TDI MP G Sbjct: 4 VLLADDEFFVRHGLKSLIEWEKCGYEVAAEADNGEDAFKLVQEIKPDLVITDIRMPVFDG 63 Query: 62 LEFM-KISKRRYPYVKWVVISAHSEFSYAQEAVRLGARDYLLKPIGKNKLLELINNLTAE 120 L+ + K+++ K+++IS +++FSYAQ+AVR GA D++LKPI +++L + L A Sbjct: 64 LQLIQKVNETLSFNTKFIIISGYNDFSYAQKAVRFGAVDFVLKPIDQDELEAALIKLAAT 123 Query: 121 IEQDNDISRQGERLKASLRFL-------REGVFQRLASGLDIGNLDIEPFIEDYKHFYMV 173 ++Q+ + E++ F+ +E +R A+ L+I N +HFY Sbjct: 124 LDQEKATNSDQEKVLLDQIFIHSLGENKKENEVRRWAAKLNINN----------RHFYYY 173 Query: 174 MV 175 ++ Sbjct: 174 LL 175 Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 38/94 (40%), Positives = 59/94 (62%) Query: 295 YIKEHFYEDLSLEKMASVVFLNPAYFSQLFKQKTGQGYKEYVTSLRLEQAKXXXXXXXXX 354 YI+ H++E++SL+ +AS+ ++NP Y QLFK+ G +KEY+ LR+ +AK Sbjct: 429 YIENHYHENISLKSIASLFYMNPVYMGQLFKKTFGVYFKEYLLKLRMNEAKKLLRQTDMR 488 Query: 355 XAEIAERVGYQDMKHFTQMFRKRYQLTPTEYRQQ 388 E+AERVG+ +F F K ++TPTEYR + Sbjct: 489 VYEVAERVGFGSTDYFVTQFEKINKMTPTEYRNK 522 >BH3842 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 530 Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 85/146 (58%), Gaps = 4/146 (2%) Query: 1 VNILVADDERVIREGIRRTIGQISPDHQVFVAAKAEEAVRIMEEQRIHIVLTDILMPGMS 60 +N+L+ DDE++ REG++ + H V A+ +A+ E + +++ DI MPG+ Sbjct: 2 INVLIVDDEQIEREGLKLFLKDRPNIHIVGEASNGRQAIEKALETQPDLMMMDIKMPGVD 61 Query: 61 GLEFMKISKRRYPYVKWVVISAHSEFSYAQEAVRLGARDYLLKPIGKNKLLELINNLTAE 120 G++ +K K++ P +++++SA F YA+E +R G ++YLLKP K +L ++ + E Sbjct: 62 GVQAVKEIKQQLPETEFIMVSAFDTFEYAREVMRYGVKEYLLKPTTKEDVLTALDRIVGE 121 Query: 121 IEQ----DNDISRQGERLKASLRFLR 142 IEQ ND + +RL+ F++ Sbjct: 122 IEQAREEKNDQYKLQQRLEQISSFVQ 147 Score = 79.7 bits (195), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 77/135 (57%), Gaps = 1/135 (0%) Query: 257 FSTVPQVVKRMREASASQVLELEPMKGSGEKAIDV-ALHYIKEHFYEDLSLEKMASVVFL 315 FSTV QV + + V L+ + + E+++ + A Y+ +HF E L+L+ +A + L Sbjct: 384 FSTVHQVTEHGKSEILHIVRTLQEWRTTDEQSLMLLARDYVHDHFREPLTLDDLAKHIGL 443 Query: 316 NPAYFSQLFKQKTGQGYKEYVTSLRLEQAKXXXXXXXXXXAEIAERVGYQDMKHFTQMFR 375 +P Y S+LFK++ + EYVT LR+E AK EI +GY+D +F+++F+ Sbjct: 444 SPYYVSKLFKERFDLTFSEYVTQLRVEHAKQLLSLTQKSLKEITYEIGYKDPNYFSRVFK 503 Query: 376 KRYQLTPTEYRQQQN 390 K +P++YR+ N Sbjct: 504 KLTGKSPSDYRKSIN 518 >BH2728 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 510 Score = 82.8 bits (203), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 74/142 (52%), Gaps = 8/142 (5%) Query: 255 HDFSTVPQVVKRMREASAS--QVLELEPM-----KGSGEKAIDVALHYIKEHFYEDLSLE 307 H F+T+ K +REA+ Q LE+ G +I L YI+EH E LSL Sbjct: 362 HYFATI-NAAKNVREATDCFYQFLEVTKQIISVYSNEGSSSIQKMLAYIEEHHSEPLSLS 420 Query: 308 KMASVVFLNPAYFSQLFKQKTGQGYKEYVTSLRLEQAKXXXXXXXXXXAEIAERVGYQDM 367 ++A+ NP+Y S F+Q +G+ EY+ +R+ +AK +EI VGY D Sbjct: 421 QLANYFHFNPSYLSAYFRQHHDEGFSEYLNKVRIRKAKEWLKSSTIPISEIYALVGYSDH 480 Query: 368 KHFTQMFRKRYQLTPTEYRQQQ 389 +F ++F+KR + P+ YR++ Sbjct: 481 SYFCKVFKKRTGMPPSRYRREN 502 Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 73/123 (59%), Gaps = 2/123 (1%) Query: 1 VNILVADDERVIREGIRRTIGQISPDHQVFV-AAKAEEAVRIMEEQRIHIVLTDILMPGM 59 N+L+ DDE++IR+GI Q+ AA ++A+ ++ + HIV+TDI+MP M Sbjct: 2 CNVLIVDDEKLIRQGIINFFDWEKEGFQIVGEAANGKDALELISKNEPHIVMTDIVMPVM 61 Query: 60 SGLEFMKISKRRYPYVKWVVISAHSEFSYAQEAVRLGARDYLLKP-IGKNKLLELINNLT 118 G++ +K KR +P V+ +V+S+ EF Y + G DY+LKP + + LL+ ++ + Sbjct: 62 DGIDLVKRVKRDFPEVEIIVLSSFEEFEYVRSTFHSGVADYILKPRLNEKDLLKTLSEVR 121 Query: 119 AEI 121 +I Sbjct: 122 GKI 124 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.321 0.137 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 27,449,937 Number of extensions: 1058112 Number of successful extensions: 15659 Number of sequences better than 1.0e-05: 286 Number of HSP's gapped: 15789 Number of HSP's successfully gapped: 297 Length of query: 402 Length of database: 38,378,431 Length adjustment: 109 Effective length of query: 293 Effective length of database: 25,807,025 Effective search space: 7561458325 Effective search space used: 7561458325 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 117 (49.7 bits)