BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0472.0020.p (204 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin1535 [S] COG0586 Uncharacterized membrane-associated protein 223 2e-58 DR2612 [S] COG0586 Uncharacterized membrane-associated protein 149 2e-36 all5093 [S] COG0586 Uncharacterized membrane-associated protein 144 1e-34 BS_yngC [S] COG0586 Uncharacterized membrane-associated protein 143 2e-34 slr0509 [S] COG0586 Uncharacterized membrane-associated protein 132 2e-31 >lin1535 [S] COG0586 Uncharacterized membrane-associated protein Length = 208 Score = 223 bits (568), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 105/192 (54%), Positives = 141/192 (73%) Query: 1 MHQLLNAITDAALNLVSSLGIWGIWIGMVLESACIPIPSEVIMLSGGLLIARGTLSFPEV 60 +H L+ ++ D + LV SLG WGI++GM++ES CIP+PSEVIML GG + G L+F V Sbjct: 2 LHTLIQSLQDFTMWLVDSLGHWGIFLGMLIESVCIPLPSEVIMLFGGFMAEAGKLNFWLV 61 Query: 61 VAAGVLGNLMGSIAAFYVGMHGGRKLLEKYGKYILFNSRHLEQSQRWFDRYGESTVFFTR 120 V AG+ GNL+GS+ A+Y+G GGR L+ K+GKYI N +HL++++ WF RYG VFF R Sbjct: 62 VFAGIAGNLVGSLIAYYIGKFGGRALVLKFGKYIFLNVKHLDKAELWFGRYGARAVFFGR 121 Query: 121 MLPFIRTFISLPAGIAGMKTGKFIFFTALGSLPWNIALVYLGYRLGDNWTIVEKYMRPVS 180 +LP IRTFISLPAGIA M KF+ +T LG +PWNI L +LGY LG NW++VEKY RP+S Sbjct: 122 VLPVIRTFISLPAGIAKMNVWKFVIYTILGCIPWNIFLTWLGYSLGSNWSVVEKYTRPIS 181 Query: 181 YAICGAVVILII 192 Y + VV +++ Sbjct: 182 YLMLALVVAIVV 193 >DR2612 [S] COG0586 Uncharacterized membrane-associated protein Length = 205 Score = 149 bits (377), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 86/199 (43%), Positives = 128/199 (64%), Gaps = 4/199 (2%) Query: 8 ITDAALNLVSSLGIWGIWIGMVLESACIPIPSEVIMLSGGLLIARGTLSFPEVVAAGVLG 67 +TD NL+ S+G GI + MVLE+ PIPSE+IM S G ARG +S VV G LG Sbjct: 1 MTDWIQNLMDSMGYLGILLLMVLENVFPPIPSELIMPSAGFAAARGDMSLGMVVLMGTLG 60 Query: 68 NLMGSIAAFYVGMHGGRKLL----EKYGKYILFNSRHLEQSQRWFDRYGESTVFFTRMLP 123 +++G++ +Y+G G L +K+GK++ + + ++++ WFDRYG V F RM+P Sbjct: 61 SVIGTLPLYYIGRAFGEDKLVAWADKHGKWLTLSGKDIKKADAWFDRYGAGAVLFGRMVP 120 Query: 124 FIRTFISLPAGIAGMKTGKFIFFTALGSLPWNIALVYLGYRLGDNWTIVEKYMRPVSYAI 183 IR+ +SLPAG++ M KF+ ++A+GS W+ AL Y GY LG+N+ VE+Y+ PVS I Sbjct: 121 GIRSLLSLPAGMSEMPLPKFLIYSAIGSALWSAALAYAGYALGENYDRVEQYVAPVSKVI 180 Query: 184 CGAVVILIILWLVRRKKER 202 G +VI W +RRK+E+ Sbjct: 181 VGLLVIGAAAWFIRRKREQ 199 >all5093 [S] COG0586 Uncharacterized membrane-associated protein Length = 205 Score = 144 bits (362), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 80/201 (39%), Positives = 121/201 (60%), Gaps = 6/201 (2%) Query: 9 TDAALNLVSSLGIWGIWIGMVLESACIPIPSEVIMLSGGLL--IARGTLSFPEVVAAGVL 66 +D N++ SLG WGI + M +E+ PIPSE+IM G + L+ V AG+L Sbjct: 3 SDWIKNIIESLGYWGIGLLMFVENLFPPIPSELIMPLAGYTANLPGSRLNIIGVFIAGLL 62 Query: 67 GNLMGSIAAFYVGMHGG----RKLLEKYGKYILFNSRHLEQSQRWFDRYGESTVFFTRML 122 G+ +G++ +Y G G R L +KYGK+I +S+ + +++RWFD G VF R++ Sbjct: 63 GSTIGALIWYYPGKFLGEQRLRYLADKYGKWISVSSKDITKAKRWFDSQGNKAVFMGRLI 122 Query: 123 PFIRTFISLPAGIAGMKTGKFIFFTALGSLPWNIALVYLGYRLGDNWTIVEKYMRPVSYA 182 P +RT IS+PAG++ M F+F+T LGS W L Y GY LG + +V+KY+ PVS Sbjct: 123 PGVRTLISVPAGVSNMPLLPFLFYTTLGSAAWVGLLTYSGYLLGSQYELVDKYLAPVSKI 182 Query: 183 ICGAVVILIILWLVRRKKERT 203 + GA+ ++ +LW V+RK T Sbjct: 183 VLGALFLVFVLWAVKRKLRNT 203 >BS_yngC [S] COG0586 Uncharacterized membrane-associated protein Length = 198 Score = 143 bits (361), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 73/196 (37%), Positives = 116/196 (59%), Gaps = 4/196 (2%) Query: 5 LNAITDAALNLVSSLGIWGIWIGMVLESACIPIPSEVIMLSGGLLIARGTLSFPEVVAAG 64 + ++ L ++++G GI IG+++E IPSE+++ GG +++ GT+ F + AG Sbjct: 1 MGSLISEILTWLTNMGYAGIAIGLMIEI----IPSEIVLAYGGYMVSEGTIGFIGAIIAG 56 Query: 65 VLGNLMGSIAAFYVGMHGGRKLLEKYGKYILFNSRHLEQSQRWFDRYGESTVFFTRMLPF 124 V+G + I +++G +GGR L+KYGKY+L H++ S+ WF +YG VF R +P Sbjct: 57 VIGGTIAQIFIYWIGRYGGRPFLDKYGKYLLIKKHHIDMSENWFQKYGAGVVFSARFIPV 116 Query: 125 IRTFISLPAGIAGMKTGKFIFFTALGSLPWNIALVYLGYRLGDNWTIVEKYMRPVSYAIC 184 +R IS+PAGIA M KF+ T L +PW+I VYLG +LG W VE + I Sbjct: 117 VRHAISIPAGIARMPFLKFVVLTVLAIIPWSILFVYLGIQLGSQWDDVENIAGTYTTPIM 176 Query: 185 GAVVILIILWLVRRKK 200 V++I L+ V +K+ Sbjct: 177 ILAVVVIALYFVIKKR 192 >slr0509 [S] COG0586 Uncharacterized membrane-associated protein Length = 205 Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 72/199 (36%), Positives = 119/199 (59%), Gaps = 4/199 (2%) Query: 8 ITDAALNLVSSLGIWGIWIGMVLESACIPIPSEVIMLSGGLLIARGTLSFPEVVAAGVLG 67 IT+ +++ LG GI + M LE+ PIPSE+IM G +A+G L + AG++G Sbjct: 5 ITEWIPQVMNQLGYGGISLLMFLENLFPPIPSELIMPLAGFAVAQGKLELFPAIVAGIIG 64 Query: 68 NLMGSIAAFYVGMHGGRKLLE----KYGKYILFNSRHLEQSQRWFDRYGESTVFFTRMLP 123 ++G+ +Y+G + LE +YGK+I +++ + +S WF RYG +VFF R++P Sbjct: 65 TILGAYPWYYIGKWVSEERLEQLADRYGKWIGLDAKDIHKSNVWFGRYGHQSVFFGRLVP 124 Query: 124 FIRTFISLPAGIAGMKTGKFIFFTALGSLPWNIALVYLGYRLGDNWTIVEKYMRPVSYAI 183 IRT +SLPAG+ M F ++ G W L GY+LGD++ +VE+Y+ PVS + Sbjct: 125 GIRTIVSLPAGVNAMGLISFTLYSLGGISLWVTFLASAGYKLGDHYELVEQYLGPVSKIV 184 Query: 184 CGAVVILIILWLVRRKKER 202 ++V +++L +VR++ R Sbjct: 185 LVSIVAILVLLIVRKQLRR 203 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.328 0.143 0.450 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 15,421,525 Number of extensions: 644980 Number of successful extensions: 1949 Number of sequences better than 1.0e-05: 82 Number of HSP's gapped: 1918 Number of HSP's successfully gapped: 82 Length of query: 204 Length of database: 38,378,431 Length adjustment: 101 Effective length of query: 103 Effective length of database: 26,729,697 Effective search space: 2753158791 Effective search space used: 2753158791 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 113 (48.1 bits)