BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0472.0019.p (246 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SP1899 [K] COG2207 AraC-type DNA-binding domain-containing proteins 110 2e-24 lin0157 [K] COG2207 AraC-type DNA-binding domain-containing prot... 82 9e-16 PA0416 [K] COG2207 AraC-type DNA-binding domain-containing proteins 79 7e-15 BH0851 [K] COG2207 AraC-type DNA-binding domain-containing proteins 79 7e-15 PA0748 [K] COG2207 AraC-type DNA-binding domain-containing proteins 74 2e-13 >SP1899 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 286 Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 75/251 (29%), Positives = 121/251 (48%), Gaps = 13/251 (5%) Query: 1 VHDYYLIHTVLDGGGSFQSSTVTQQCRKGDTFVIFPGSLFSYQADEHNPWHYVWVALQGT 60 + D Y++H + G G F ++GD F++ P L YQAD PW Y W+ + G Sbjct: 34 IRDTYVLHYITKGQGKFHYKGKIVDLKEGDFFLLKPEELTFYQADSKEPWAYYWLGITGG 93 Query: 61 AVSGLLSDIGITRERPLL-----YTENTSELHSLYERIRICFKQSAYPRLESLEASGWTR 115 + I+ + L+ +T+ T++L S R K S L L G Sbjct: 94 KAPDYFALSQISDQSYLIQSETCHTQTTAKLISDIVRFAQITKSS---ELAQLHIMGQLH 150 Query: 116 LLLHHFGQDNLALLPARPKELPEIIDRQIDQAIRWISLQFHQQISIDHMAATLGYHRAHL 175 L+ H G + P + K+ + + R I + Q ++I +A L HR++L Sbjct: 151 ELMFHLG----TIAPNQKKKNISSTHQLYLECKRLIDSHYPQSLTIQDLAKELSVHRSYL 206 Query: 176 SKAFKQKTGLSPKQYLLKMRLDKAKSLLSGTL-TIDQVASSVGFNDALYFSRQFRKFSGM 234 S FK+ LSPK+YLL +R+ +A+ LL T +I +A SVGF+D L+FS+ ++++ Sbjct: 207 SSVFKEFNTLSPKEYLLYVRMHRARQLLENTQESIKVIAYSVGFSDPLHFSKAYKQYFNQ 266 Query: 235 SPSEYRAMLRQ 245 +PS R Q Sbjct: 267 TPSHTRKEYSQ 277 >lin0157 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 277 Score = 81.6 bits (200), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 66/249 (26%), Positives = 120/249 (48%), Gaps = 21/249 (8%) Query: 2 HDYYLIHTVLDGGGSFQSSTVTQQCRKGDTFVIFPGSLFSYQADEHNPWHY-VWVALQGT 60 HD+ I + +G + KGD + PG + Y E + + + + Sbjct: 32 HDFLEISIICEGNVIYDIEGERVALEKGDMLIFNPG-VNHYDITEPGMTNAQLHIGFRNF 90 Query: 61 AVSGLLSDIGITRERPLLYTENTSELHSLYERIRICFKQSAYPRLESLEASGWTRLLLHH 120 A+ G + ++ L E+ S + S+ ++I I K + P + + + +L++H Sbjct: 91 ALEGYSRNTFPFKKAFLRKKEDESAILSISKQI-IEEKDAEKPGYDLILKAFVMQLIIH- 148 Query: 121 FGQDNLALLPARPKELPE-----IIDRQ-----IDQAIRWISLQFHQQISIDHMAATLGY 170 L A P++L D Q +++ I ++ + +S+ ++ T+ Sbjct: 149 ------VLREATPEQLENNGVKLSTDEQQKQMLVNEIIHYMEKHHTEDVSLSTLSQTMYI 202 Query: 171 HRAHLSKAFKQKTGLSPKQYLLKMRLDKAKSLLSGT-LTIDQVASSVGFNDALYFSRQFR 229 A++SK FK++TG SP YL+K+RL +A+ LL +T+ Q A+ VG+NDA YFS+ F+ Sbjct: 203 SPAYISKVFKEETGESPINYLIKIRLTRAEELLKNKDVTVKQAANMVGYNDAYYFSKLFK 262 Query: 230 KFSGMSPSE 238 K+ G PSE Sbjct: 263 KYYGFPPSE 271 >PA0416 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 264 Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 66/246 (26%), Positives = 104/246 (42%), Gaps = 15/246 (6%) Query: 2 HDYYLIHTVLDGGGSFQSSTVTQQCRKGDTFVIFPGSLFSYQADEHNPWHYVWVALQGTA 61 HD ++I L G T Q GD + PG + + PW + + L Sbjct: 30 HDEFVISANLCGLEDVWLDGRTFQADSGDLTLYNPGQIQGGGVRDGQPWRFASLYLPAAE 89 Query: 62 VSGLLSDIGITRERPLLYTENTSELHSLYERIRICFKQSAYPRLESLEASGWTRLLLHHF 121 ++ L + +RPLL + L I + R E LL Sbjct: 90 LASSLDLSSVEFDRPLLRSPALG--RELAASIEALLASDRFARERGEER------LLEFL 141 Query: 122 GQDNLALLPARPKELPEIIDRQIDQAIRWISL---QFHQQISIDHMAATLGYHRAHLSKA 178 G+ LL A LP+ D R +L + + +D MA +G + HL +A Sbjct: 142 GR----LLAASGTRLPQRADPGRPAVARLQALLAERLAEPPDLDGMAEQVGLSKYHLLRA 197 Query: 179 FKQKTGLSPKQYLLKMRLDKAKSLLSGTLTIDQVASSVGFNDALYFSRQFRKFSGMSPSE 238 FK+ TGLSP+Q+ +++R +A LL L + +VA ++GF D + +R F G+SP Sbjct: 198 FKKATGLSPRQWSMQLRTRRALGLLRRGLAVGEVAHALGFADQSHLTRYFTSAYGISPGR 257 Query: 239 YRAMLR 244 Y+ +R Sbjct: 258 YQRAVR 263 >BH0851 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 261 Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 41/105 (39%), Positives = 62/105 (59%), Gaps = 1/105 (0%) Query: 142 RQIDQAIRWISLQFHQQISIDHMAATLGYHRAHLSKAFKQKTGLSPKQYLLKMRLDKAKS 201 ++D AI +I ++ +S+ H+A+ +GY H S+ FK+KTGLSP Y+ +RL KAK Sbjct: 6 NEMDVAISYIHNHLYEPLSLSHIASYVGYSSYHFSRLFKEKTGLSPLYYVSSLRLQKAKE 65 Query: 202 LLSGT-LTIDQVASSVGFNDALYFSRQFRKFSGMSPSEYRAMLRQ 245 LL T LT+ + +G F+ +F K GMSPS +R + Q Sbjct: 66 LLLNTNLTVRDIGLEIGQQSLGTFTTRFTKCVGMSPSHFRESMNQ 110 >PA0748 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 306 Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 4/120 (3%) Query: 125 NLALLPARPK-ELPEIIDRQIDQAIRWISLQFHQQISIDHMAATLGYHRAHLSKAFKQKT 183 +LA+ PAR + ++D ID + H +++D +AA R H +K ++ T Sbjct: 186 SLAVRPARASLKSGRVLD--IDAVQALMRAHLHDSLNLDELAAQFKLSRFHFAKTYRALT 243 Query: 184 GLSPKQYLLKMRLDKAKSLL-SGTLTIDQVASSVGFNDALYFSRQFRKFSGMSPSEYRAM 242 G +P Q ++M++ A LL G L + Q+A +G+ D YFSR FRK GM+PS YRA+ Sbjct: 244 GQAPIQDFIQMKMAHACRLLDEGALEVRQIAEQLGYADPYYFSRLFRKVVGMAPSHYRAL 303 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.322 0.135 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,778,628 Number of extensions: 694968 Number of successful extensions: 3287 Number of sequences better than 1.0e-05: 866 Number of HSP's gapped: 2469 Number of HSP's successfully gapped: 866 Length of query: 246 Length of database: 38,378,431 Length adjustment: 104 Effective length of query: 142 Effective length of database: 26,383,695 Effective search space: 3746484690 Effective search space used: 3746484690 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 114 (48.5 bits)