BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0472.0015.p (289 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0652 [V] COG1131 ABC-type multidrug transport system, ATPase c... 297 1e-80 SA1747 [V] COG1131 ABC-type multidrug transport system, ATPase c... 223 2e-58 SA0339 [V] COG1131 ABC-type multidrug transport system, ATPase c... 156 3e-38 STM1028 [R] COG3772 Phage-related lysozyme (muraminidase) 145 5e-35 TM1028 [V] COG1131 ABC-type multidrug transport system, ATPase c... 145 5e-35 >BH0652 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 288 Score = 297 bits (760), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 140/289 (48%), Positives = 204/289 (70%), Gaps = 1/289 (0%) Query: 1 MSDVIKLQGLSKSYDRFELRDISLGIKEGYITGLIGPNGAGKTSLIKMIMGMVYPDQGEI 60 M ++++L ++K++ F + + L +K+G++TG IG NGAGK++ IKM+M ++ PD GE+ Sbjct: 1 MENIVELINVTKTFKDFSINKMDLQVKKGFVTGFIGANGAGKSTTIKMMMNLLKPDDGEV 60 Query: 61 QLFGQNHLQHQAANKDRIGYVSDENIYYEHLTVKDMKRVIVPFYTRWDENTYLKYQEKFK 120 +LFG ++ H+ A K+RIG+V D N+++E L +KD+K ++ P Y RWD+ + +Y +KF+ Sbjct: 61 KLFGMDYTTHEKAIKERIGFVYDGNVFFEGLNLKDIKHIVGPAYKRWDDTLFYQYVDKFE 120 Query: 121 LPPGKKIKDLSKGMKIKFSIAVALSHGADLLIMDEPTSGLDPIFRRELLELLSEHIQDEK 180 LP K IK SKGM++K S+A+ALSH A+L+IMDEPT+GLDPIFRRELL++L E + D Sbjct: 121 LPLNKAIKTFSKGMQMKASLAIALSHHAELIIMDEPTAGLDPIFRRELLDILQELMIDND 180 Query: 181 KSIVFSTHNTADLDRIADYIVFINEGRLVFNEMRETLTEKYLLVKGGKELLDRDVRRWFI 240 ++I FSTH T DLDRIADYI F+ G LVFN+ + E Y LVKGG +LLD+D + F+ Sbjct: 181 RTIFFSTHITTDLDRIADYIAFMQGGNLVFNQSIHDIDENYALVKGGLDLLDKDTEKAFV 240 Query: 241 GLRESGVGFEGLIGNRVEGERYFKDTAICETPTLEEIMYFTVKGSEAHV 289 +R + GFE L N + F DT I E TLE+IMY+ +KG +V Sbjct: 241 HVRRASTGFEALTNNLSAVKNIFGDTVIIERATLEDIMYY-MKGGVHYV 288 >SA1747 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 298 Score = 223 bits (569), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 115/291 (39%), Positives = 178/291 (61%), Gaps = 20/291 (6%) Query: 3 DVIKLQGLSKSYDRFELRDISLGIKEGYITGLIGPNGAGKTSLIKMIMGMVYPDQGEIQL 62 + I+L ++ S D+F L++IS + +G++TG IG NGAGKT++I++IM + P G I++ Sbjct: 2 NAIELSNVNYSSDQFNLKNISFKVPQGFVTGFIGRNGAGKTTIIRLIMDLYQPQTGVIRV 61 Query: 63 FGQNHLQHQAANKDRIGYVSDENIYYEHLTVKDMKRVIVPFYTRWDENTYLKYQEKFKLP 122 ++ + K+ IG+V EN + E T K ++++I PFY +WD + Y EKF LP Sbjct: 62 LEEDMALNPIELKNSIGFVYSENYFNERWTTKQLEKMIAPFYRKWDHQVFEFYLEKFDLP 121 Query: 123 PGKKIKDLSKGMKIKFSIAVALSHGADLLIMDEPTSGLDPIFRRELLELLSEHIQDEKKS 182 K IK S GMK+K S+AVA SH A+L I DEPTSGLDP+ R ELLE++ + + DE K+ Sbjct: 122 INKSIKTFSTGMKMKLSLAVAFSHHAELYIFDEPTSGLDPLARNELLEIIQQELIDENKT 181 Query: 183 IVFSTHNTADLDRIADYIVFINEGRLVFNEMRETLTEKYLLVKGGKELLDRDV------- 235 I STH +DL++IADYI+ +++G ++ N +E L ++Y +V G E LD ++ Sbjct: 182 IFMSTHIISDLEKIADYIIHLSDGEVILNGSKEQLLQRYQVVSGATEDLDDELASLLIYE 241 Query: 236 ---RRWFIGLRESGVGFEGLIGNRVEGERYFKDTAICETPTLEEIMYFTVK 283 R FIGL E F+ ++G++V TP++E +M + K Sbjct: 242 EHKRTGFIGLTEHAQVFKEILGHKVN----------ITTPSIENLMVYLEK 282 >SA0339 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 280 Score = 156 bits (395), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 90/266 (33%), Positives = 151/266 (56%), Gaps = 10/266 (3%) Query: 1 MSDVIKLQGLSKSY--DRFELRDISLGIKEGYITGLIGPNGAGKTSLIKMIMGMVYPDQG 58 M+ ++ + ++K Y F+L+D SL I GLIG NG+GK++LI +++G + D G Sbjct: 1 MTTLLNVDRVNKQYKDSDFKLQDASLTISTNETVGLIGKNGSGKSTLINILVGNRHKDNG 60 Query: 59 EIQLFGQNHLQHQAANKDRIGYVSDENIYYEHLTVKDMKRVIVPFYTRWDENTYLKYQEK 118 I FG+ H K+ IG V D+ LT+KD+ +V YT W+ + + Sbjct: 61 SIAFFGEEHAADDVEYKEHIGVVFDDLRVPNKLTIKDIDKVFQSIYTTWNSQKFFDLIKY 120 Query: 119 FKLPPGKKIKDLSKGMKIKFSIAVALSHGADLLIMDEPTSGLDPIFRRELLELLSEHIQD 178 F+LP KIK S+GM++K ++ +ALSH LLI+DE T+G+D R E++ELL + + Sbjct: 121 FELPLQTKIKTFSRGMRMKIALTIALSHDVKLLILDEATAGMDVSGREEVMELLEDFVA- 179 Query: 179 EKKSIVFSTHNTADLDRIADYIVFINEGRLVFNEMRETLTEKYLLVKGGKELLDRDV--- 235 + I+ S+H + D++++AD +VF+ +GR++ E ++ L +Y +V G D+DV Sbjct: 180 QGGGILISSHISEDIEQLADKLVFMKDGRMILTEQKDILLAQYGIVTTG----DKDVEIP 235 Query: 236 RRWFIGLRESGVGFEGLIGNRVEGER 261 + I R S ++ L+ + E E Sbjct: 236 KHLIIASRLSKGKYQILVKDYAEIEN 261 >STM1028 [R] COG3772 Phage-related lysozyme (muraminidase) Length = 150 Score = 145 bits (367), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 0/293 (0%), Positives = 0/293 (0%), Gaps = 10/293 (3%) Query: 3 DVIKLQGLSKSYDRFE-LRDISLGIKEGYITGLIGPNGAGKTSLIKMIMGMVYPDQGEIQ 61 I +G++ + G IG + GM+ + + Sbjct: 2 MRISEKGITLIKEFEGCSLTAYPDPGTGGDPWTIGYGWTHSVDGKPVKPGMMIDEATAER 61 Query: 62 LFGQNHLQHQAANKDRIGYVSDENIYYEHLTVKDMKRVIVPFYTRWDENTYLKYQEKFKL 121 L + ++ + + + ++ + Sbjct: 62 LLNTGLVGYENDVSRLVKVKLTQGQFDALVSFAYNLGARTLSSSTLLRKLNAGDYAGAAD 121 Query: 122 PPGKKIKDLSKGMKIKFSIAVALSHGADLLIMDEPTSGLDPIFRRELLELLSEHIQDEKK 181 Sbjct: 122 - 180 Query: 182 SIVFSTHNTADLDRIADYIVFINEGRLVFNEMRETLT-EKYLLVKGGKELLDR-----DV 235 Sbjct: 181 240 Query: 236 RRWFIGLRESGVGFEGLIGNRVEGERYFKDTAI-CETPTLEEI-MYFTVKGSE 286 Sbjct: 241 293 >TM1028 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 293 Score = 145 bits (367), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 95/293 (32%), Positives = 164/293 (55%), Gaps = 10/293 (3%) Query: 3 DVIKLQGLSKSYDRFE-LRDISLGIKEGYITGLIGPNGAGKTSLIKMIMGMVYPDQGEIQ 61 V++++ L+K Y + + ++ ++EG I G IGPNGAGKT+ I++++G+++PD G + Sbjct: 2 SVVEVRDLTKYYGKSRGVEGVTFSVEEGEIFGFIGPNGAGKTTTIRLLLGLIFPDSGLAE 61 Query: 62 LFGQNHLQHQAANKDRIGYVSDENIYYEHLTVKDMKRVIVPFYTRWDENTYLKYQEKFKL 121 +FG++ L+ + +GY+ E +Y +TV++ R FY + D + + F L Sbjct: 62 IFGKDVLKEGKEIRKNVGYIPGEVSFYPEVTVEEFLRYSASFYEKVDWDYVKELCGVFSL 121 Query: 122 PPGKKIKDLSKGMKIKFSIAVALSHGADLLIMDEPTSGLDPIFRRELLELLSEHIQDEKK 181 K+IK+LS G K K +I AL H LLI+DEPT+GLDPI + E+L +++ Sbjct: 122 DTKKRIKELSMGNKKKVAIVQALMHRPKLLILDEPTNGLDPIVQNTFFEILKNE-KEKGT 180 Query: 182 SIVFSTHNTADLDRIADYIVFINEGRLVFNEMRETLT-EKYLLVKGGKELLDR-----DV 235 ++ FS+H ++++R+ D + I +GR++ E E L E+Y +V+ E L++ +V Sbjct: 181 TVFFSSHILSEVERLCDRVAMIKDGRIIRVEKVENLKGERYKVVRVKGENLEKLKDLAEV 240 Query: 236 RRWFIGLRESGVGFEGLIGNRVEGERYFKDTAI-CETPTLEEI-MYFTVKGSE 286 R + F G + +E R K + E P+LEEI M + +G E Sbjct: 241 NRLKFENGTAEFLFSGNVERLLEILRSLKLSDFWVEEPSLEEIFMSYYREGEE 293 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.140 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 22,577,824 Number of extensions: 1077615 Number of successful extensions: 8331 Number of sequences better than 1.0e-05: 1709 Number of HSP's gapped: 6771 Number of HSP's successfully gapped: 1820 Length of query: 289 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 184 Effective length of database: 26,268,361 Effective search space: 4833378424 Effective search space used: 4833378424 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 115 (48.9 bits)