BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0472.0010.p
         (139 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L110960 [K] COG1846 Transcriptional regulators                        144   6e-35
SA0322 [K] COG1846 Transcriptional regulators                          74   8e-14
SMc00562 [K] COG1846 Transcriptional regulators                        60   9e-10
CAC0197 [K] COG1846 Transcriptional regulators                         52   3e-07
BMEI0253 [K] COG1846 Transcriptional regulators                        50   1e-06

>L110960 [K] COG1846 Transcriptional regulators
          Length = 139

 Score =  144 bits (362), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 73/139 (52%), Positives = 96/139 (69%)

Query: 1   MPNTPFSDLIREIGLXXXXXXXXRLAELGLNAQQGQMIGYIAEHEDKGLIQKDLAEHFNR 60
           M NT +S+L R I           + +L +N QQ ++I YIAE++DKGLIQKDLAE FNR
Sbjct: 1   MANTIYSNLFRSISQKSMMTSSQMMKDLEVNHQQARVIAYIAENQDKGLIQKDLAEVFNR 60

Query: 61  KEASITSMLQGLEKKGYIKRVIPKENERQKKIYLLDKAEVLVEEFNEIFAEVEKSITDSL 120
           + ASITSMLQGLEKKGYI+R IPKENERQK IY+L K   ++ + N+IF   EK + + L
Sbjct: 61  RGASITSMLQGLEKKGYIERRIPKENERQKNIYILPKGLKIINQINQIFEASEKKLIEPL 120

Query: 121 TAEEAETLMKLLHKVNSNL 139
           T +E    ++LL K++ NL
Sbjct: 121 TEKEQAEFLRLLEKIDDNL 139


>SA0322 [K] COG1846 Transcriptional regulators
          Length = 139

 Score = 73.6 bits (179), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 71/135 (52%)

Query: 5   PFSDLIREIGLXXXXXXXXRLAELGLNAQQGQMIGYIAEHEDKGLIQKDLAEHFNRKEAS 64
            +S L R I          +L +  +  +QG  +GY+  H+  GL Q D+A+   R   +
Sbjct: 4   TYSYLFRMISHEMKQKADQKLEQFDITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPT 63

Query: 65  ITSMLQGLEKKGYIKRVIPKENERQKKIYLLDKAEVLVEEFNEIFAEVEKSITDSLTAEE 124
           ++++L+ LE+K  I R +  ++ R+K I L      LVE F  IF E+E+++   L+ EE
Sbjct: 64  VSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEAFTSIFDEMEQTLVSQLSEEE 123

Query: 125 AETLMKLLHKVNSNL 139
            E +   L K+ S+L
Sbjct: 124 NEQMKANLTKMLSSL 138


>SMc00562 [K] COG1846 Transcriptional regulators
          Length = 150

 Score = 60.1 bits (144), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 67/116 (57%), Gaps = 2/116 (1%)

Query: 24  RLAELGLNAQQGQMIGYIAEHEDKGLIQKDLAEHFNRKEASITSMLQGLEKKGYIKRVIP 83
           R+ E GL   + +M+  +A  E  GL Q++LAE  + +  +I  +L G+EK+G+I+R + 
Sbjct: 28  RVKERGLTLPRARMLFALARKE--GLNQRELAEELDIETPTIVRLLDGMEKQGFIERRVE 85

Query: 84  KENERQKKIYLLDKAEVLVEEFNEIFAEVEKSITDSLTAEEAETLMKLLHKVNSNL 139
             + R K+I++ D    + +E  ++ +++ + +   L  +E    +K++ K+ +N+
Sbjct: 86  LSDRRAKQIHMTDVGRSVADEIQKLASDIREEVLGGLQPQEIAVALKVVCKIATNI 141


>CAC0197 [K] COG1846 Transcriptional regulators
          Length = 140

 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 60/110 (54%), Gaps = 2/110 (1%)

Query: 30  LNAQQGQMIGYIAEHEDKGLIQKDLAEHFNRKEASITSMLQGLEKKGYIKRVIPKENERQ 89
           L   Q +++ Y+  H+  G +QKD+A     + +++TS+L  +EK G I+R +   N R 
Sbjct: 29  LTHGQPKVLDYLKYHD--GCVQKDIAAACEIESSTVTSLLLRMEKSGLIERRMLNGNRRS 86

Query: 90  KKIYLLDKAEVLVEEFNEIFAEVEKSITDSLTAEEAETLMKLLHKVNSNL 139
             ++L +K +  +E+   +F E+EK   D  + +E    ++   ++ +NL
Sbjct: 87  LYVFLTEKGKEALEKVTSVFDELEKIAFDGFSEDEKVDFIEKFFRIYNNL 136


>BMEI0253 [K] COG1846 Transcriptional regulators
          Length = 136

 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 64/116 (55%), Gaps = 2/116 (1%)

Query: 24  RLAELGLNAQQGQMIGYIAEHEDKGLIQKDLAEHFNRKEASITSMLQGLEKKGYIKRVIP 83
           R+ E GL   + + +  + E E  GL QK+LAE    + A++  +L GLE++ +I+R   
Sbjct: 19  RVKERGLTLARARTLLALIEQE--GLYQKELAEALEIENATMVRLLDGLERQSFIERQAV 76

Query: 84  KENERQKKIYLLDKAEVLVEEFNEIFAEVEKSITDSLTAEEAETLMKLLHKVNSNL 139
           + + R K++ +  + + L  +  ++  +V + + D ++ EE    + ++ K +S++
Sbjct: 77  QGDRRAKRVVMTAEGKQLAAQVEKLAGDVREDLLDGVSDEELSIALNVMRKTSSSM 132


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.313    0.133    0.350 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 8,889,461
Number of extensions: 310761
Number of successful extensions: 2447
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 2457
Number of HSP's successfully gapped: 12
Length of query: 139
Length of database: 38,378,431
Length adjustment: 95
Effective length of query: 44
Effective length of database: 27,421,701
Effective search space: 1206554844
Effective search space used: 1206554844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 110 (47.0 bits)