BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0472.0008.p (539 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value yliB [E] COG0747 ABC-type dipeptide transport system, periplasmi... 138 2e-32 Z1054 [E] COG0747 ABC-type dipeptide transport system, periplasm... 138 2e-32 ECs0909 [E] COG0747 ABC-type dipeptide transport system, peripla... 138 2e-32 PH0807 [E] COG0747 ABC-type dipeptide transport system, periplas... 136 8e-32 RSc1380 [E] COG0747 ABC-type dipeptide transport system, peripla... 136 9e-32 >yliB [E] COG0747 ABC-type dipeptide transport system, periplasmic component Length = 512 Score = 138 bits (348), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 112/463 (24%), Positives = 212/463 (45%), Gaps = 36/463 (7%) Query: 93 FESLVAFDSKGEIVDWLAKSHSISEDGLTYTFVLRDGLKFSNGTEVTAEDAVFSLNR--- 149 ++ L D + ++ + LA+S+++S+DG+TYT LR+G+KF +GT+ A +L+R Sbjct: 59 YQGLFGLDKEMKLKNVLAESYTVSDDGITYTVKLREGIKFQDGTDFNAAAVKANLDRASD 118 Query: 150 ---HLKVGGPLEISAKVDTIKAQDKQTLVITLKEPYTPFISELSNFSNGILP----NNFG 202 HLK + AK + I D T+ ITLK+P++ FI+ L++ + ++ +G Sbjct: 119 PANHLKRYNLYKNIAKTEAI---DPTTVKITLKQPFSAFINILAHPATAMISPAALEKYG 175 Query: 203 GVTEAEFFKKPVGTGPFVVESWDPAGDLTFTKNPNYWQEGKPYIDKLVYKLIEDDSQAIN 262 E F+ PVGTGP+ +++W+ + K YWQ G P +D + ++ + D++ Sbjct: 176 --KEIGFY--PVGTGPYELDTWNQTDFVKVKKFAGYWQPGLPKLDSITWRPVADNNTRAA 231 Query: 263 QLKAGEVNAIESLALQNANEIKNGTDTAVLTNGSWVTEQLFFNTLDEHFKDVHVXXXXXX 322 L+ GE + + A ++ + ++ + S + + N + F + V Sbjct: 232 MLQTGEAQFAFPIPYEQATLLEKNKNIELMASPSIMQRYISMNVTQKPFDNPKVREALNY 291 Query: 323 XXXXXGLTKALTFGYAQTANSLLPTTIPYNGNDTIKPLNFNVDEAKAELAKSAFPNGFST 382 L K GYA A ++P +I Y + KP ++ +A+ L ++ +PNGFST Sbjct: 292 AINRPALVKVAFAGYATPATGVVPPSIAY--AQSYKPWPYDPVKARELLKEAGYPNGFST 349 Query: 383 KLLVASGNSTRXXXXXXXXXXXXXXXXKIEIESV---ELAAFRE---------RFFAYDF 430 L + +ST K ++ ++ + AA E R F + Sbjct: 350 TLWSSHNHSTAQKVLQFTQQQLAQVGIKAQVTAMDAGQRAAEVEGKGQKESGVRMFYTGW 409 Query: 431 AAMLNSGQADSPEANSILAFQTDPKGFSKSYWTHYTNDEVTKLLYEGQKTADGDGRAEIY 490 +A ++G+AD + + P F+ ++ Y+N +V L + KT D + +Y Sbjct: 410 SA--STGEADWALSPLFASQNWPPTLFNTAF---YSNKQVDDFLAQALKTNDPAEKTRLY 464 Query: 491 SKLLQTLADEVPYIPLYYPDILIGARSSVQDLTVLPNGSVRLE 533 + E P+IPL ++ ++ ++P+ E Sbjct: 465 KAAQDIIWQESPWIPLVVEKLVSAHSKNLTGFWIMPDTGFSFE 507 >Z1054 [E] COG0747 ABC-type dipeptide transport system, periplasmic component Length = 512 Score = 138 bits (348), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 110/459 (23%), Positives = 208/459 (45%), Gaps = 28/459 (6%) Query: 93 FESLVAFDSKGEIVDWLAKSHSISEDGLTYTFVLRDGLKFSNGTEVTAEDAVFSLNR--- 149 ++ L D + ++ + LA+S+++S+DG+TYT LR+G+KF +GT+ A +L+R Sbjct: 59 YQGLFGLDKEMKLKNVLAESYTVSDDGITYTVKLREGIKFQDGTDFNAAAVKANLDRASD 118 Query: 150 ---HLKVGGPLEISAKVDTIKAQDKQTLVITLKEPYTPFISELSNFSNGILPNNFGGVTE 206 HLK + AK + I D T+ ITLK+P++ FI+ L++ + ++ Sbjct: 119 PANHLKRYNLYKNIAKTEAI---DPTTVKITLKQPFSAFINILAHPATAMISPAALEKYG 175 Query: 207 AEFFKKPVGTGPFVVESWDPAGDLTFTKNPNYWQEGKPYIDKLVYKLIEDDSQAINQLKA 266 E PVGTGP+ +++W+ + K YWQ G P +D + ++ + D++ L+ Sbjct: 176 KEIGFHPVGTGPYELDTWNQTDFVKVKKFAGYWQPGLPKLDSITWRPVADNNTRAAMLQT 235 Query: 267 GEVNAIESLALQNANEIKNGTDTAVLTNGSWVTEQLFFNTLDEHFKDVHVXXXXXXXXXX 326 GE + + A ++ + ++ + S + + N + F + V Sbjct: 236 GEAQFAFPIPYEQAALLEKNKNIELMASPSIMQRYISMNVTQKPFDNPKVREALNYAINR 295 Query: 327 XGLTKALTFGYAQTANSLLPTTIPYNGNDTIKPLNFNVDEAKAELAKSAFPNGFSTKLLV 386 L K GYA A ++P +I Y + KP ++ +A+ L ++ +PNGFST L Sbjct: 296 PALVKVAFAGYATPATGVVPPSIAY--AQSYKPWPYDPVKARELLKEAGYPNGFSTTLWS 353 Query: 387 ASGNSTRXXXXXXXXXXXXXXXXKIEIESV---ELAAFRE---------RFFAYDFAAML 434 + +ST K ++ ++ + AA E R F ++A Sbjct: 354 SHNHSTAQKVLQFTQQQLAQVGIKAQVTAMDAGQRAAEVEGKGQKESGVRMFYTGWSA-- 411 Query: 435 NSGQADSPEANSILAFQTDPKGFSKSYWTHYTNDEVTKLLYEGQKTADGDGRAEIYSKLL 494 ++G+AD + + P F+ ++ Y+N +V L + KT D + +Y Sbjct: 412 STGEADWALSPLFASQNWPPTLFNTAF---YSNKQVDDFLAQALKTNDPAEKTRLYKAAQ 468 Query: 495 QTLADEVPYIPLYYPDILIGARSSVQDLTVLPNGSVRLE 533 + E P+IPL ++ ++ ++P+ E Sbjct: 469 DIIWQESPWIPLVVEKLVSAHSKNLTGFWIMPDTGFSFE 507 >ECs0909 [E] COG0747 ABC-type dipeptide transport system, periplasmic component Length = 512 Score = 138 bits (348), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 110/459 (23%), Positives = 208/459 (45%), Gaps = 28/459 (6%) Query: 93 FESLVAFDSKGEIVDWLAKSHSISEDGLTYTFVLRDGLKFSNGTEVTAEDAVFSLNR--- 149 ++ L D + ++ + LA+S+++S+DG+TYT LR+G+KF +GT+ A +L+R Sbjct: 59 YQGLFGLDKEMKLKNVLAESYTVSDDGITYTVKLREGIKFQDGTDFNAAAVKANLDRASD 118 Query: 150 ---HLKVGGPLEISAKVDTIKAQDKQTLVITLKEPYTPFISELSNFSNGILPNNFGGVTE 206 HLK + AK + I D T+ ITLK+P++ FI+ L++ + ++ Sbjct: 119 PANHLKRYNLYKNIAKTEAI---DPTTVKITLKQPFSAFINILAHPATAMISPAALEKYG 175 Query: 207 AEFFKKPVGTGPFVVESWDPAGDLTFTKNPNYWQEGKPYIDKLVYKLIEDDSQAINQLKA 266 E PVGTGP+ +++W+ + K YWQ G P +D + ++ + D++ L+ Sbjct: 176 KEIGFHPVGTGPYELDTWNQTDFVKVKKFAGYWQPGLPKLDSITWRPVADNNTRAAMLQT 235 Query: 267 GEVNAIESLALQNANEIKNGTDTAVLTNGSWVTEQLFFNTLDEHFKDVHVXXXXXXXXXX 326 GE + + A ++ + ++ + S + + N + F + V Sbjct: 236 GEAQFAFPIPYEQAALLEKNKNIELMASPSIMQRYISMNVTQKPFDNPKVREALNYAINR 295 Query: 327 XGLTKALTFGYAQTANSLLPTTIPYNGNDTIKPLNFNVDEAKAELAKSAFPNGFSTKLLV 386 L K GYA A ++P +I Y + KP ++ +A+ L ++ +PNGFST L Sbjct: 296 PALVKVAFAGYATPATGVVPPSIAY--AQSYKPWPYDPVKARELLKEAGYPNGFSTTLWS 353 Query: 387 ASGNSTRXXXXXXXXXXXXXXXXKIEIESV---ELAAFRE---------RFFAYDFAAML 434 + +ST K ++ ++ + AA E R F ++A Sbjct: 354 SHNHSTAQKVLQFTQQQLAQVGIKAQVTAMDAGQRAAEVEGKGQKESGVRMFYTGWSA-- 411 Query: 435 NSGQADSPEANSILAFQTDPKGFSKSYWTHYTNDEVTKLLYEGQKTADGDGRAEIYSKLL 494 ++G+AD + + P F+ ++ Y+N +V L + KT D + +Y Sbjct: 412 STGEADWALSPLFASQNWPPTLFNTAF---YSNKQVDDFLAQALKTNDPAEKTRLYKAAQ 468 Query: 495 QTLADEVPYIPLYYPDILIGARSSVQDLTVLPNGSVRLE 533 + E P+IPL ++ ++ ++P+ E Sbjct: 469 DIIWQESPWIPLVVEKLVSAHSKNLTGFWIMPDTGFSFE 507 >PH0807 [E] COG0747 ABC-type dipeptide transport system, periplasmic component Length = 597 Score = 136 bits (343), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 126/475 (26%), Positives = 203/475 (42%), Gaps = 40/475 (8%) Query: 61 GGTFV---YGRPAAVTSFDLHNEITSNNAFAIDKVFESLVAFDSKGEIVDWLAKSHSISE 117 GGT + +G P SF+ ++ +++F LV D ++ LA IS+ Sbjct: 38 GGTLIVLYWGDP---KSFNPDAQVDDAGYGIANQIFCKLVTLDRDYNVIPDLAYKWEISD 94 Query: 118 DGLTYTFVLRDGLKFSNGTEVTAEDAVFS---LNRHLKVGGPLEISAKVDTIKAQDKQTL 174 DG YTF L + +G VTAED ++ + ++ + + + ++ I+ D T+ Sbjct: 95 DGKVYTFYLNPNATWHDGVPVTAEDVKWTFEAIKKYKGIAYGIIHADNIEKIEVVDNYTV 154 Query: 175 VITLKEPYTPFISELSNFSNGILPNNFGGV------TEAEFFKKPVGTGPFVVESWDPAG 228 LKEP+ PF+S L+ + ILP + + + KP+G GPF W Sbjct: 155 RFYLKEPFAPFLSFLAWYGTFILPKHIYEKYSDWLDPKNPYLNKPIGCGPFKFVEWVKGD 214 Query: 229 DLTFTKNPNYWQEGKPYIDKLVYKLIEDDSQAINQLKAGEVNAI-ESLALQNANEIKNGT 287 +T N NY++ G+P IDK++YK+I D S A+ AGE + + + L +K+ Sbjct: 215 HITLVANENYFR-GRPGIDKIIYKIIPDASAALQAFLAGEGDVLGQRPPLTEIPRLKSTP 273 Query: 288 DTAVLTNGSWVTEQLFFNTLDEHFKDVHVXXXXXXXXXXXGLTKALTFGYAQTANSLLPT 347 +V L FN + +DV V L + G A Sbjct: 274 GVSVSIRPVPSRWYLGFNLKRPYLQDVRVRLAIAYAINRKELVEKAENGLGYPAEGTYVP 333 Query: 348 TIPYNGNDTIKPLNFNVDEAKAELAKSAF-----------PNG--FSTKLLVASGNSTRX 394 I + N K +N ++AK L ++ F P+G +LL +G+ T Sbjct: 334 AIKWAYNPNAKLPEYNPEKAKQLLDEAGFKDINGDGFRETPDGKPLELRLLYFTGSDTNA 393 Query: 395 XXXXXXXXXXXXXXXKIEIESVELAAFRERFFA-YDFAAMLNSGQADSPEANSILAFQTD 453 K+++ES E+A + ++ DF L G AN + F+ Sbjct: 394 ICTLIKEQLAKVGL-KVKLESYEIATWEQKVVKERDFDLALVDGFQGPDPANMEIRFK-- 450 Query: 454 PKGFSKSY--WTHYTNDEVTKLLYEGQKTADGDGRAEIYSKLLQTLADEVPYIPL 506 S +Y + Y N E KLL E KT D + R E+Y K + LA ++PY+PL Sbjct: 451 ----STAYINFAGYNNTEFDKLLEEAAKTTDTEKRKELYWKAQEILAKDLPYLPL 501 >RSc1380 [E] COG0747 ABC-type dipeptide transport system, periplasmic component Length = 517 Score = 136 bits (342), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 108/461 (23%), Positives = 201/461 (43%), Gaps = 19/461 (4%) Query: 93 FESLVAFDSKGEIVDWLAKSHSISEDGLTYTFVLRDGLKFSNGTEVTAEDAVFSLNRHLK 152 ++ L FD ++V+ L +S+ +S+DGL YTF L G+KF +GT A +L+R Sbjct: 62 YQGLFGFDKDMKLVNVLCESYDVSKDGLVYTFRLHKGVKFHDGTTFDANAVKANLDRVTN 121 Query: 153 VGGPLE---ISAKVDTIKAQDKQTLVITLKEPYTPFISELSNFSNGILPNNFGGVTEAEF 209 L+ + +V + D T +TLKEP++PF++ L++ S ++ + Sbjct: 122 PANKLKRYTLFNRVAKTEVVDPYTARVTLKEPFSPFVNVLAHPSAAMISPAALQKYGKDI 181 Query: 210 FKKPVGTGPFVVESWDPAGDLTFTKNPNYWQEGKPYIDKLVYKLIEDDSQAINQLKAGEV 269 PVGTGPF W L K YW+ G P ID + +K + D++ ++ GE Sbjct: 182 AFHPVGTGPFEFVEWKQTDYLKGKKFAGYWKTGLPKIDTITWKPVVDNNTRATVMQTGEA 241 Query: 270 NAIESLALQNANEIKNGTDTAVLTNGSWVTEQLFFNTLDEHFKDVHVXXXXXXXXXXXGL 329 + S+ + A +K ++ S + + FNT + F + V L Sbjct: 242 DFAFSIPFEQAAVLKGSPKVDLIAAPSIIQRYITFNTRVKPFDNPKVRQAINYAINKDAL 301 Query: 330 TKALTFGYAQTANSLLPTTIPYNGNDTIKPLNFNVDEAKAELAKSAFPNGFSTKLLVASG 389 TK YA A+ ++P + Y + P +N +A+A L ++ +P+GF T+L A Sbjct: 302 TKVAFSSYAVPADGVVPQGVDYAVK--LGPWPYNPAKARALLKEAGYPDGFETQLWSAYN 359 Query: 390 NSTRXXXXXXXXXXXXXXXXKIEIESVELAAFRERFFA-----------YDFAAMLNSGQ 438 ++T K +++++E ER + Y ++G+ Sbjct: 360 HTTAQKIIQFVQQQLAQVGIKAQVQALEAGQRVERVESVQKPEDAGVRMYYMGWSSSTGE 419 Query: 439 ADSPEANSILAFQTDPKGFSKSYWTHYTNDEVTKLLYEGQKTADGDGRAEIYSKLLQTLA 498 +D + + PK + +Y Y ND+V + +T D + ++Y+ + + Sbjct: 420 SDWAIRPLLASEAMPPKQLNTAY---YKNDQVDADIAGALRTTDRAEKTKLYTDAQKRIW 476 Query: 499 DEVPYIPLYYPDILIGARSSVQDLTVLPNGSVRLEAVSISK 539 ++ P+ L ++ + V P+GS + + I + Sbjct: 477 EDAPWAFLVTEKVVYARAKRLSGAYVAPDGSFSFDDIDIKQ 517 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.313 0.131 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 34,713,104 Number of extensions: 1378905 Number of successful extensions: 3844 Number of sequences better than 1.0e-05: 195 Number of HSP's gapped: 3512 Number of HSP's successfully gapped: 196 Length of query: 539 Length of database: 38,378,431 Length adjustment: 111 Effective length of query: 428 Effective length of database: 25,576,357 Effective search space: 10946680796 Effective search space used: 10946680796 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 118 (50.1 bits)