BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0472.0007.p (329 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PAB0092 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel tran... 196 4e-50 BMEII0209 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel tr... 155 6e-38 BH0029 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel trans... 153 4e-37 BH0348 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel trans... 151 1e-36 FN0397 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel trans... 145 8e-35 >PAB0092 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 671 Score = 196 bits (499), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 20/310 (6%), Positives = 50/310 (16%), Gaps = 6/310 (1%) Query: 17 SRKWLVIALIRALAVILCVMTAVFFIIRIVPGDPAKMILGEYSTPEALESMHHALGLDLP 76 + +R + V I + +++ + Sbjct: 2 ESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQR 61 Query: 77 LWDQFLRFMNTLFTQGDTGNSIITGTSARELIAQRAPXXXXXXXXXXXXXXXXXXXXXXX 136 + L + + S+ +A Sbjct: 62 VGAAPLAAFSQIR-HEVPMLSLDNVFDEESFLAFNKRVQDRLKNNEKVTWCCELKLDGLA 120 Query: 137 XXXHKDKLLDHLIRIFPAITLGMPIFWVGLLLILLFSVRLGWFPVGGVGEGWSGTLHSLA 196 + + T G I + + G + + Sbjct: 121 VSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEV-R----GEVF 175 Query: 197 LPAVTVAFSQIPTLVRSLRAQMLEVLESDFVVTLRAARIPNRVILFKHVLRNSALPTLML 256 LP + + + RI + L L L Sbjct: 176 LPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 Query: 257 LGVNISYLIGGTLVVEQVYGIKGIGSLLFTSISKRDFPVIQGIALYCAXXXXXXXXXXXX 316 ++ L+ V + ++ L Sbjct: 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLA 295 Query: 317 XXXXXDPRTK 326 + Sbjct: 296 QQEQLGFVAR 305 >BMEII0209 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 315 Score = 155 bits (393), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 96/306 (31%), Positives = 149/306 (48%), Gaps = 10/306 (3%) Query: 27 RALAVILCVMTAVFFIIRIVPGDPAKMILGEYSTPEALESMHHALGLDLPLWDQFLRFMN 86 +A+ V+L V F +++++PGDPA +I G+ ++PE +E + LGLD P Q +++ Sbjct: 12 QAIPVMLIVAILTFLLMKLLPGDPAILIAGDGASPETVERIRVELGLDQPTVVQLGQWLW 71 Query: 87 TLFTQGDTGNSIITGTSARELIAQRAPXXXXXXXXXXXXXXXXXXXXXXXXXXHKDKLLD 146 LF D G S + + IA+R P +D D Sbjct: 72 NLF-HFDLGRSFLLSQPVSQAIAERLPVTISLALLAFAITIPVGIIMGVVAAYLRDSWFD 130 Query: 147 HLIRIFPAITLGMPIFWVGLLLILLFSVRLGWFPVGGVGE------GWSGTLHSLALPAV 200 + + + +P FW+ +L ++LFSV LGWFP G GW L SL LPA Sbjct: 131 TGVMSLALLGVSVPSFWLAILAVILFSVTLGWFPSAGYVPFLDSPLGW---LRSLILPAS 187 Query: 201 TVAFSQIPTLVRSLRAQMLEVLESDFVVTLRAARIPNRVILFKHVLRNSALPTLMLLGVN 260 +A QI L R R++MLEV++ D++ T R+ + +L H RN+ + L + G Sbjct: 188 ILALFQIGYLARMTRSEMLEVMDQDYIRTARSKGVSEYSVLSTHAFRNALVSVLTVSGYI 247 Query: 261 ISYLIGGTLVVEQVYGIKGIGSLLFTSISKRDFPVIQGIALYCAXXXXXXXXXXXXXXXX 320 S LIGG++V+EQ++ + G+G LL +I RD PV+QG L+ Sbjct: 248 FSLLIGGSVVIEQIFALPGLGRLLVQAILARDLPVVQGTMLFLGFLFVAINVLVDILYTI 307 Query: 321 XDPRTK 326 DPR + Sbjct: 308 ADPRVR 313 >BH0029 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 314 Score = 153 bits (386), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 88/281 (31%), Positives = 148/281 (52%), Gaps = 6/281 (2%) Query: 25 LIRALAVILCVMTAVFFIIRIVPGDPAKMILGEYSTPEALESMHHALGLDLPLWDQFLRF 84 L++ + V++ V VF ++ +VPGDPA MI GE + + +E++ LGL+ P+ Q+ + Sbjct: 9 LLQTIPVLIGVSIIVFSLLHLVPGDPAIMIAGESAPQQTVENIRERLGLNDPVPVQYFNY 68 Query: 85 MNTLFTQGDTGNSIITGTSARELIAQRAPXXXXXXXXXXXXXXXXXXXXXXXXXXHKDKL 144 ++ + QGD G S +G + IAQR + Sbjct: 69 VSGV-IQGDLGTSFRSGRPVADDIAQRFWVTLELSIYSIILSVFLGLIAGIVSATKRYSF 127 Query: 145 LDHLIRIFPAITLGMPIFWVGLLLILLFSVRLG-WFPVGGVG---EGWSGTLHSLALPAV 200 D + I L MP FW+GL+LI F++ W P GW G+ + LP + Sbjct: 128 ADTSLMIIALFGLSMPNFWLGLMLIQWFAIGYTPWLPFDTAWFAPSGW-GSFRQIVLPVI 186 Query: 201 TVAFSQIPTLVRSLRAQMLEVLESDFVVTLRAARIPNRVILFKHVLRNSALPTLMLLGVN 260 T+ + + R R+ MLEVL D++ T RA + RV++++H L+N+ +P + ++G+ Sbjct: 187 TLGTAGAAIVARMTRSSMLEVLHQDYIRTARAKGVKERVVVYRHALKNALIPVVTVVGIQ 246 Query: 261 ISYLIGGTLVVEQVYGIKGIGSLLFTSISKRDFPVIQGIAL 301 +L+GG+++ EQV+ I G+G L+ +I +RDFPV+QG L Sbjct: 247 FGFLLGGSVLTEQVFAINGLGRLIIEAIRQRDFPVVQGAVL 287 >BH0348 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 305 Score = 151 bits (381), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 91/295 (30%), Positives = 145/295 (49%), Gaps = 6/295 (2%) Query: 32 ILCVMTAVFFIIRIVPGDPAKMILGEYSTPEALESMHHALGLDLPLWDQFLRFMNTLFTQ 91 +L +++ + F + V G+P ++L E ++ E ++ + +LGLD P Q+ +++ L Q Sbjct: 15 VLFIISFIVFALVFVAGNPVALMLPEDASQEDIDQLTASLGLDQPFLVQYGKYLLNL-VQ 73 Query: 92 GDTGNSIITGTSARELIAQRAPXXXXXXXXXXXXXXXXXXXXXXXXXXHKDKLLDHLIRI 151 GD G S TSA L+ +R P + +D L Sbjct: 74 GDFGESFRYNTSALPLVLERLPATLELAVAALVLAVAMAIPLGVWSATKQHSPVDLLAAG 133 Query: 152 FPAITLGMPIFWVGLLLILLFSVRLGWFPVGGVGEGWSGTLHSLALPAVTVAFSQIPTLV 211 I MP FW+G++LIL+FSV LGWFPV G GTL L LPA+T+A + Sbjct: 134 GSVIGKAMPNFWLGIMLILIFSVMLGWFPVSG-----RGTLGHLVLPAMTLATGIAAEIT 188 Query: 212 RSLRAQMLEVLESDFVVTLRAARIPNRVILFKHVLRNSALPTLMLLGVNISYLIGGTLVV 271 R LR+ M+E+L D++ T R+ I ++++KH RNS +P + ++ + S ++GGTL+ Sbjct: 189 RLLRSSMIEILNQDYIRTARSKGIREGMVVYKHAFRNSLIPLVTIVALQTSTVVGGTLIT 248 Query: 272 EQVYGIKGIGSLLFTSISKRDFPVIQGIALYCAXXXXXXXXXXXXXXXXXDPRTK 326 E V+ G+G LL ++ RD ++Q A DPR K Sbjct: 249 ETVFSWPGLGQLLIQAVHTRDMAIVQACVFVIAILVIFMNLVADVLYRLLDPRIK 303 >FN0397 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 308 Score = 145 bits (367), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 92/310 (29%), Positives = 155/310 (50%), Gaps = 6/310 (1%) Query: 19 KWLVIALIRALAVILCVMTAVFFIIRIVPGDPAKMILGEYSTPEALESMHHALGLDLPLW 78 K+++ L+ + V+L V VF I+ + PGDPA++ILGE + EA+ ++ +GL+ P + Sbjct: 3 KYILKRLVLLIPVMLGVTLLVFTIMYLTPGDPAQLILGESAPKEAVAALREKMGLNDPFF 62 Query: 79 DQFLRFMNTLFTQGDTGNSIITGTSARELIAQRAPXXXXXXXXXXXXXXXXXXXXXXXXX 138 Q+ RF+ GD G S TG I R P Sbjct: 63 MQYFRFVKNALV-GDFGRSYTTGREVFAEIFARFPNTVVLAVLGVLISILIGIPVGIISA 121 Query: 139 XHKDKLLDHLIRIFPAITLGMPIFWVGLLLILLFSVRLGWFPVGGVGEGWSGTLHSLALP 198 + + D + + + MP+FW+GL+LILLFSV+LG FP GG +G+S S+ LP Sbjct: 122 TKQYSITDSFSMVLALLGVSMPVFWLGLMLILLFSVKLGIFPSGGF-DGFS----SVILP 176 Query: 199 AVTVAFSQIPTLVRSLRAQMLEVLESDFVVTLRAARIPNRVILFKHVLRNSALPTLMLLG 258 ++ + + R R+ MLEV+ D++ T RA + +V++ KH L+N+ +P + ++G Sbjct: 177 SIALGVGSAAIVTRMTRSSMLEVIRQDYIRTARAKGVAEKVVINKHALKNALIPIITVVG 236 Query: 259 VNISYLIGGTLVVEQVYGIKGIGSLLFTSISKRDFPVIQGIALYCAXXXXXXXXXXXXXX 318 + L+GG ++ E V+ G+G L+ +I ++D P + ++ A Sbjct: 237 LQFGGLLGGAVLTESVFSWPGVGRLMVDAIRQKDTPTVLASVVFLAVVYSVVNLLVDLLY 296 Query: 319 XXXDPRTKGK 328 DPR K + Sbjct: 297 AFVDPRIKSQ 306 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.327 0.142 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 19,926,863 Number of extensions: 734687 Number of successful extensions: 2822 Number of sequences better than 1.0e-05: 181 Number of HSP's gapped: 2509 Number of HSP's successfully gapped: 192 Length of query: 329 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 222 Effective length of database: 26,037,693 Effective search space: 5780367846 Effective search space used: 5780367846 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 116 (49.3 bits)