BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0472.0006.p (279 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PAB0093 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel tran... 184 1e-46 MA0880 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel trans... 182 5e-46 YPO3451 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel tran... 181 8e-46 AGc4571 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel tran... 181 1e-45 FN0398 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel trans... 179 6e-45 >PAB0093 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 287 Score = 184 bits (467), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 89/253 (35%), Positives = 155/253 (61%), Gaps = 2/253 (0%) Query: 22 VGTLMFLVLIILAVFIPYLSPYSPTEQNLSAFLQPPSAAHWLGTDQLGRDLFTRLIYAAR 81 +G ++F VL+ A+F P+++PYSP EQ+L L+PP +W GTD+ GRD+F+R++Y +R Sbjct: 29 LGIIIFWVLV--AIFAPFIAPYSPVEQHLEDRLKPPCEKYWFGTDEFGRDIFSRIVYGSR 86 Query: 82 TDLKIMVLAEIIPFCTGIFLGMLAGYYGKWLDAAISLLTDTLIAFPFYLIVIIVAFASGA 141 L + ++ +I G+ LG+++GY+G +D I D + AFP ++ + + G Sbjct: 87 IALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPALILALAIVAILGP 146 Query: 142 GERGIYITFMLVGWIVFARVVRGLSASFRKQEWVASAQTLGLPGVRIILRHLLPNVLPQA 201 G I LVGW +ARVVR + S +++ ++ +A+ +G +RI+ ++LPNV+ Sbjct: 147 GLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRILFSYILPNVMSSI 206 Query: 202 VVVLMTDMIGLLVAIVTLGYLGIGIAPPTPDWGTMISDGQPFITTAWWLSAVPGFAVVYT 261 +V++ ++ ++ +L +LG+G PP+PDWG M+S + ++T A W S PG A++ Sbjct: 207 LVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVTRAPWYSIFPGLAIMTL 266 Query: 262 GIALSLVGDGLAD 274 + + VGDGL D Sbjct: 267 VLGFNFVGDGLRD 279 >MA0880 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 278 Score = 182 bits (462), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 96/263 (36%), Positives = 155/263 (58%) Query: 12 KRIWNTPSLLVGTLMFLVLIILAVFIPYLSPYSPTEQNLSAFLQPPSAAHWLGTDQLGRD 71 +R+ ++G M L+ AVF P+++P+ P E NL P + +GTD LGR Sbjct: 4 QRLKKNKIAMIGLAMITFLLFFAVFAPWIAPHDPVEPNLGKRFLSPCKEYPMGTDDLGRC 63 Query: 72 LFTRLIYAARTDLKIMVLAEIIPFCTGIFLGMLAGYYGKWLDAAISLLTDTLIAFPFYLI 131 + +R+IY AR L++ + I G+ LG+++GY+G LD I D ++AFP ++ Sbjct: 64 VLSRVIYGARVSLQVSMTVVGIITVIGVTLGLISGYFGGALDELIMRFVDIVLAFPGIIL 123 Query: 132 VIIVAFASGAGERGIYITFMLVGWIVFARVVRGLSASFRKQEWVASAQTLGLPGVRIILR 191 + VA A G G + + LV W FARVVR + +++E+V SA+ LG + I+ R Sbjct: 124 AMAVAGALGPGLFNVMLALALVSWTGFARVVRSSVMAVKEKEFVESARALGCNDLYIMTR 183 Query: 192 HLLPNVLPQAVVVLMTDMIGLLVAIVTLGYLGIGIAPPTPDWGTMISDGQPFITTAWWLS 251 H+LPNV+ +V+ DM +++A +L +LG+G PP PDWG+M+++G+ F+ TA +L+ Sbjct: 184 HILPNVITPVLVLATLDMGFIILAAASLSFLGLGAQPPIPDWGSMLNNGRVFMRTAPFLT 243 Query: 252 AVPGFAVVYTGIALSLVGDGLAD 274 PG A+ +A + +GDGL D Sbjct: 244 IFPGIAITTAVMAFNFLGDGLRD 266 >YPO3451 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 278 Score = 181 bits (460), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 103/269 (38%), Positives = 163/269 (60%), Gaps = 5/269 (1%) Query: 9 YR-LKRIWNTPSLLVGTLMFLVLIILAVFIPYLSPYSPTEQNLSAFLQPP-SAAHWLGTD 66 YR LKR +PS +G + +L+I+AVF P+L+P P QN + L PP + H LGTD Sbjct: 7 YRTLKR---SPSTSIGLFILSLLVIIAVFAPWLAPQDPNWQNAADRLLPPGDSGHLLGTD 63 Query: 67 QLGRDLFTRLIYAARTDLKIMVLAEIIPFCTGIFLGMLAGYYGKWLDAAISLLTDTLIAF 126 GRD+ +RLIY R L +++L +I G+ +G+L+GYYG WL+ + +TD +++ Sbjct: 64 SYGRDMLSRLIYGTRPTLGLVLLVTVITLPLGLLVGVLSGYYGGWLERILMRITDVVMSM 123 Query: 127 PFYLIVIIVAFASGAGERGIYITFMLVGWIVFARVVRGLSASFRKQEWVASAQTLGLPGV 186 P ++ G G + L W +AR R RK +++A+A+ +G+ G+ Sbjct: 124 PRLILAFAFVAMLGPGLLNGALALALTTWPAYARQARAEIQLLRKSDYLAAAEMMGIRGL 183 Query: 187 RIILRHLLPNVLPQAVVVLMTDMIGLLVAIVTLGYLGIGIAPPTPDWGTMISDGQPFITT 246 R++ H+LP LP AVV L D+ G+++A LG+LG+G PP +WG+M++DG I Sbjct: 184 RLLWGHILPMCLPSAVVRLALDLAGIILAAAGLGFLGLGARPPMSEWGSMVADGMQVIFD 243 Query: 247 AWWLSAVPGFAVVYTGIALSLVGDGLADI 275 WW++A+PG A++ + +A +L+GDGL DI Sbjct: 244 QWWIAAIPGCAILLSSMAFNLLGDGLRDI 272 >AGc4571 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 671 Score = 181 bits (460), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 13/283 (4%), Positives = 41/283 (14%), Gaps = 5/283 (1%) Query: 2 HKGSRMAYRLK-RIW----NTPSLLVGTLMFLVLIILAVFIPYLSPYSPTEQNLSAFLQP 56 + + + + + L + ++ Sbjct: 16 RHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAPLAAFSQIRH 75 Query: 57 PSAAHWLGTDQLGRDLFTRLIYAARTDLKIMVLAEIIPFCTGIFLGMLAGYYGKWLDAAI 116 L + + G + AA Sbjct: 76 EVPMLSLDNVFDEESFLAFNKRVQDRLKNNEKVTWCCELKLDGLAVSILYENGVLVSAAT 135 Query: 117 SLLTDTLIAFPFYLIVIIVAFASGAGERGIYITFMLVGWIVFARVVRGLSASFRKQEWVA 176 T + I GE + + ++ R+ Sbjct: 136 RGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINEDARRTGGKV 195 Query: 177 SAQTLGLPGVRIILRHLLPNVLPQAVVVLMTDMIGLLVAIVTLGYLGIGIAPPTPDWGTM 236 A + + + + + Sbjct: 196 FANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQFKKWGLPVSD 255 Query: 237 ISDGQPFITTAWWLSAVPGFAVVYTGIALSLVGDGLADIWRKK 279 G + V + + +++ Sbjct: 256 RVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQE 298 >FN0398 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 289 Score = 179 bits (453), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 88/228 (38%), Positives = 139/228 (60%) Query: 47 EQNLSAFLQPPSAAHWLGTDQLGRDLFTRLIYAARTDLKIMVLAEIIPFCTGIFLGMLAG 106 +QNL+ L PP+ HWLGTD+ GRD+F RLI+ AR LK+ +LA I G LG ++G Sbjct: 54 KQNLAERLMPPNGKHWLGTDEFGRDIFARLIHGARVSLKVGILAISISVVVGGILGAISG 113 Query: 107 YYGKWLDAAISLLTDTLIAFPFYLIVIIVAFASGAGERGIYITFMLVGWIVFARVVRGLS 166 Y+G +D I + D +A P L+ I + A G + I+ + FAR+VR Sbjct: 114 YFGGVIDNVIMRVVDIFLAVPSILLAIAIVSALGPSMLNLMISISVSYVPNFARIVRASV 173 Query: 167 ASFRKQEWVASAQTLGLPGVRIILRHLLPNVLPQAVVVLMTDMIGLLVAIVTLGYLGIGI 226 S R QE++ +A+ +G RII++H++PN L +V + G +++ L ++G+GI Sbjct: 174 LSIRDQEFIEAAKAIGASNSRIIMKHIIPNSLAPVIVQGTLGVAGAILSTAGLSFIGLGI 233 Query: 227 APPTPDWGTMISDGQPFITTAWWLSAVPGFAVVYTGIALSLVGDGLAD 274 PP P+WG+M+S G+ ++ AWW++ PG A++ T ++L+L+GDGL D Sbjct: 234 QPPAPEWGSMLSGGRQYLRYAWWVTTFPGVAIMITILSLNLLGDGLRD 281 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.329 0.144 0.456 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 21,350,457 Number of extensions: 893773 Number of successful extensions: 3263 Number of sequences better than 1.0e-05: 183 Number of HSP's gapped: 3075 Number of HSP's successfully gapped: 186 Length of query: 279 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 174 Effective length of database: 26,268,361 Effective search space: 4570694814 Effective search space used: 4570694814 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 115 (48.9 bits)