BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0472.0004.p (242 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value VC0170 [R] COG1123 ATPase components of various ABC-type transpo... 230 2e-60 BH3639 [E] COG4608 ABC-type oligopeptide transport system, ATPas... 224 1e-58 BH0027 [E] COG4608 ABC-type oligopeptide transport system, ATPas... 224 1e-58 ZdppF [E] COG4608 ABC-type oligopeptide transport system, ATPase... 222 5e-58 ECs4420 [E] COG4608 ABC-type oligopeptide transport system, ATPa... 222 5e-58 >VC0170 [R] COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase Length = 571 Score = 230 bits (586), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 119/232 (51%), Positives = 157/232 (67%), Gaps = 5/232 (2%) Query: 2 DDISLQLEEHTTLGLVGESGSGKSTLARVIAGLIAPDGGKILLGSQELRKKRS----REQ 57 +++S + E T GLVGESGSGKST+ARVIAGL P+ G++ +L +S R Sbjct: 330 NNVSFAVHEGETFGLVGESGSGKSTIARVIAGLYQPNAGRVTFEGIDLTALKSEHERRPL 389 Query: 58 HKKIQMIFQNPDASLNPKHSIRQILSEALLFHKLVH-RPQVEQRCKELLARVHLEAKALD 116 +++QM+FQNP S+NP+ I I++E + FHKL + Q +LL V L A Sbjct: 390 RRQMQMVFQNPYTSMNPRMKIFDIIAEPIRFHKLTRSESETRQIVNDLLEHVGLGKMAGL 449 Query: 117 RYPHEFSGGQRQRIAIARALSVEPSLLIADEPTSALDVSVQLSVLELFKSLKTELNLTML 176 +YPHEFSGGQRQRI+IARAL+ P LLI DEPTSALDVSVQ +L L K L+ ELNLTML Sbjct: 450 KYPHEFSGGQRQRISIARALATRPRLLICDEPTSALDVSVQAQILNLLKDLQDELNLTML 509 Query: 177 FISHDLGVIHAISDTVAVMRQGKLVEKSSRDQFFTRPEHDYSRELLSAVPKM 228 FISHDL VI + D V VM+ G L+E + +Q FT P+H+YS++L+S +P+ Sbjct: 510 FISHDLPVIRQMCDRVGVMQMGTLLEVAPTEQLFTDPQHEYSKKLISLMPEF 561 Score = 168 bits (426), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 93/234 (39%), Positives = 143/234 (61%), Gaps = 10/234 (4%) Query: 4 ISLQLEEHTTLGLVGESGSGKSTLARVIAGLIAPDG----GKILLGSQE---LRKKRSRE 56 ++L ++ +G+VGESG+GKST+ + L++P G G++ L ++ L + RE Sbjct: 26 LTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLSPPGTIAGGEVYLNGEKISGLSPQAMRE 85 Query: 57 -QHKKIQMIFQNPDASLNPKHSIRQILSEALLFHKLVHRPQVEQRCKELLARVHLEA--K 113 + KI IFQ+P SLNP ++ L+E + + V + QR L+ +V + Sbjct: 86 VRGSKIGFIFQDPMTSLNPLFTVEHQLTETIHANMQVSAEEAYQRALSLMKQVGIPQPEN 145 Query: 114 ALDRYPHEFSGGQRQRIAIARALSVEPSLLIADEPTSALDVSVQLSVLELFKSLKTELNL 173 L +YPH+FSGG RQR+ IA AL+ EP L+IADEPT+ALDVS+Q +L L + L + N+ Sbjct: 146 RLKQYPHQFSGGMRQRVVIAIALAGEPDLIIADEPTTALDVSIQDQILNLIRELCKKNNV 205 Query: 174 TMLFISHDLGVIHAISDTVAVMRQGKLVEKSSRDQFFTRPEHDYSRELLSAVPK 227 + ++HD+GV+ ++D VAVM +G LVE + PEH Y+R L+SAVP+ Sbjct: 206 GCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPTAKVLGTPEHPYTRSLISAVPR 259 >BH3639 [E] COG4608 ABC-type oligopeptide transport system, ATPase component Length = 308 Score = 224 bits (571), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 112/231 (48%), Positives = 157/231 (67%), Gaps = 3/231 (1%) Query: 1 LDDISLQLEEHTTLGLVGESGSGKSTLARVIAGLIAPDGGKILLGSQELRK---KRSREQ 57 +D +SL+LEE T GLVGESGSGK+T R I GL G IL Q++ K K+ + Sbjct: 30 VDGVSLELEEGQTYGLVGESGSGKTTTGRAIIGLNKLTAGHILFDGQDITKQLKKKKNDI 89 Query: 58 HKKIQMIFQNPDASLNPKHSIRQILSEALLFHKLVHRPQVEQRCKELLARVHLEAKALDR 117 + IQMIFQ+P +SLNPK + I++E L + + + + +R +ELL V L +++ + Sbjct: 90 RRNIQMIFQDPYSSLNPKKRVLDIIAEPLRNFEKLSKLEERKRVEELLEIVGLSRESIFK 149 Query: 118 YPHEFSGGQRQRIAIARALSVEPSLLIADEPTSALDVSVQLSVLELFKSLKTELNLTMLF 177 YPHEFSGGQRQRI IARA++++P L+IADEP SALDVSVQ VL K ++ E NLT LF Sbjct: 150 YPHEFSGGQRQRIGIARAIALKPKLIIADEPVSALDVSVQAQVLNFMKDIQKEFNLTYLF 209 Query: 178 ISHDLGVIHAISDTVAVMRQGKLVEKSSRDQFFTRPEHDYSRELLSAVPKM 228 ISHDLG+I + D + +M +G+LVE+ RD + P+H Y++ L++A+P M Sbjct: 210 ISHDLGIIRHMCDRIGIMYRGRLVEEGVRDDIYESPQHIYTKRLIAAIPDM 260 >BH0027 [E] COG4608 ABC-type oligopeptide transport system, ATPase component Length = 338 Score = 224 bits (570), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 114/229 (49%), Positives = 153/229 (66%), Gaps = 3/229 (1%) Query: 1 LDDISLQLEEHTTLGLVGESGSGKSTLARVIAGLIAPDGGKILLGSQEL---RKKRSREQ 57 +DD+S + E T+ +VGESG GKST R I L P GKI ++L K+ R++ Sbjct: 32 VDDVSFTIYEGETVSIVGESGCGKSTTGRAILRLDEPTDGKIEFQGEDLLSLNKREMRKK 91 Query: 58 HKKIQMIFQNPDASLNPKHSIRQILSEALLFHKLVHRPQVEQRCKELLARVHLEAKALDR 117 K +Q+IFQ+P AS+NP+ +IRQ+L EA+ K+V R + +R +EL+ V L + DR Sbjct: 92 RKDLQIIFQDPYASINPRQTIRQVLEEAMEIQKVVPRDKRGERIRELMDTVGLGSHQADR 151 Query: 118 YPHEFSGGQRQRIAIARALSVEPSLLIADEPTSALDVSVQLSVLELFKSLKTELNLTMLF 177 +PHEFSGGQRQRI IARALSV P L++ DE SALDVS+Q V+ L K L+ E LT LF Sbjct: 152 FPHEFSGGQRQRIGIARALSVNPKLIVCDEAVSALDVSIQAQVINLLKRLQREFKLTYLF 211 Query: 178 ISHDLGVIHAISDTVAVMRQGKLVEKSSRDQFFTRPEHDYSRELLSAVP 226 ISHDLGV+ ISD V VM G++VE + + F P+H Y++ LLSA+P Sbjct: 212 ISHDLGVVRHISDRVIVMYLGRIVEIADKTSLFENPQHPYTKALLSAIP 260 >ZdppF [E] COG4608 ABC-type oligopeptide transport system, ATPase component Length = 334 Score = 222 bits (565), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 113/231 (48%), Positives = 153/231 (66%), Gaps = 3/231 (1%) Query: 1 LDDISLQLEEHTTLGLVGESGSGKSTLARVIAGLIAPDGGKILLGSQELRKKRSREQ--- 57 LD +S LE TL +VGESG GKSTL R++ + P GG++ Q+L K + Q Sbjct: 38 LDGVSFNLERGKTLAVVGESGCGKSTLGRLLTMIETPTGGELYYQGQDLLKHDPQAQKLR 97 Query: 58 HKKIQMIFQNPDASLNPKHSIRQILSEALLFHKLVHRPQVEQRCKELLARVHLEAKALDR 117 +KIQ++FQNP SLNP+ I QIL E LL + + + Q ++ ++A+V L+ + DR Sbjct: 98 RQKIQIVFQNPYGSLNPRKKIGQILEEPLLINTSLSKEQRREKALSMMAKVGLKTEHYDR 157 Query: 118 YPHEFSGGQRQRIAIARALSVEPSLLIADEPTSALDVSVQLSVLELFKSLKTELNLTMLF 177 YPH FSGGQRQRIAIAR L ++P ++IADEP SALDVSV+ VL L L+ EL L+ +F Sbjct: 158 YPHMFSGGQRQRIAIARGLMLDPDVVIADEPVSALDVSVRAQVLNLMMDLQQELGLSYVF 217 Query: 178 ISHDLGVIHAISDTVAVMRQGKLVEKSSRDQFFTRPEHDYSRELLSAVPKM 228 ISHDL V+ I+D V VM G+ VEK ++DQ F P H Y++ LLSA P++ Sbjct: 218 ISHDLSVVEHIADEVMVMYLGRCVEKGTKDQIFNNPRHPYTQALLSATPRL 268 >ECs4420 [E] COG4608 ABC-type oligopeptide transport system, ATPase component Length = 334 Score = 222 bits (565), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 113/231 (48%), Positives = 153/231 (66%), Gaps = 3/231 (1%) Query: 1 LDDISLQLEEHTTLGLVGESGSGKSTLARVIAGLIAPDGGKILLGSQELRKKRSREQ--- 57 LD +S LE TL +VGESG GKSTL R++ + P GG++ Q+L K + Q Sbjct: 38 LDGVSFNLERGKTLAVVGESGCGKSTLGRLLTMIETPTGGELYYQGQDLLKHDPQAQKLR 97 Query: 58 HKKIQMIFQNPDASLNPKHSIRQILSEALLFHKLVHRPQVEQRCKELLARVHLEAKALDR 117 +KIQ++FQNP SLNP+ I QIL E LL + + + Q ++ ++A+V L+ + DR Sbjct: 98 RQKIQIVFQNPYGSLNPRKKIGQILEEPLLINTSLSKEQRREKALSMMAKVGLKTEHYDR 157 Query: 118 YPHEFSGGQRQRIAIARALSVEPSLLIADEPTSALDVSVQLSVLELFKSLKTELNLTMLF 177 YPH FSGGQRQRIAIAR L ++P ++IADEP SALDVSV+ VL L L+ EL L+ +F Sbjct: 158 YPHMFSGGQRQRIAIARGLMLDPDVVIADEPVSALDVSVRAQVLNLMMDLQQELGLSYVF 217 Query: 178 ISHDLGVIHAISDTVAVMRQGKLVEKSSRDQFFTRPEHDYSRELLSAVPKM 228 ISHDL V+ I+D V VM G+ VEK ++DQ F P H Y++ LLSA P++ Sbjct: 218 ISHDLSVVEHIADEVMVMYLGRCVEKGTKDQIFNNPRHPYTQALLSATPRL 268 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.317 0.133 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 16,943,800 Number of extensions: 650055 Number of successful extensions: 8712 Number of sequences better than 1.0e-05: 2145 Number of HSP's gapped: 5876 Number of HSP's successfully gapped: 2399 Length of query: 242 Length of database: 38,378,431 Length adjustment: 103 Effective length of query: 139 Effective length of database: 26,499,029 Effective search space: 3683365031 Effective search space used: 3683365031 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 114 (48.5 bits)