BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0471.0022.p (218 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH1200 [TK] COG2197 Response regulator containing a CheY-like re... 241 7e-64 lin1021 [TK] COG2197 Response regulator containing a CheY-like r... 232 3e-61 SA1700 [TK] COG2197 Response regulator containing a CheY-like re... 200 1e-51 SPy1621 [TK] COG2197 Response regulator containing a CheY-like r... 189 2e-48 SP0387 [TK] COG2197 Response regulator containing a CheY-like re... 184 9e-47 >BH1200 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 209 Score = 241 bits (615), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 123/212 (58%), Positives = 156/212 (73%), Gaps = 4/212 (1%) Query: 7 IKVLLVDDHEMVRIGLAAVLGTEDXXXXXXXXXXXXXXXRLAQEYNPDVVLMDLVMDGMD 66 IKV+LVDDHEMVR+GL+A L T+ +L QE PDVVLMDLVM+ MD Sbjct: 2 IKVVLVDDHEMVRMGLSAYLRTQSDIEIVGEASDGHQGVKLVQETKPDVVLMDLVMEKMD 61 Query: 67 GIETTRQLLKLYPDCKVIVLTSYLDDEKMYPVIEAGAFSYLLKTSRASEVADAIRAAARG 126 G++ T ++ KVIVLTSY+DDEK+YPVIEAGAFSYLLKTS A E+A AIRAAA G Sbjct: 62 GVQATEAIMNTTEGVKVIVLTSYIDDEKVYPVIEAGAFSYLLKTSSAKEIASAIRAAANG 121 Query: 127 QSVLESQVASKMMNRFRSNAKSSEAPAYKELTEREMEVLKLLAQGRSNQDIADQLIIGIK 186 ++V+E++V +KMM R RS K ++ELT RE+EVL+L+ +G+SNQ IAD+L IGIK Sbjct: 122 EAVVEAKVTNKMMERMRSRKKE----LHEELTPRELEVLRLIGEGKSNQGIADELYIGIK 177 Query: 187 TVKFHVTNILAKLGVEDRTQAAIYAYKNGLAE 218 TVK HV+NIL KL +EDRTQ A+YA+++ L E Sbjct: 178 TVKTHVSNILHKLQLEDRTQIAVYAHRHRLVE 209 >lin1021 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 212 Score = 232 bits (592), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 117/212 (55%), Positives = 154/212 (72%), Gaps = 3/212 (1%) Query: 7 IKVLLVDDHEMVRIGLAAVLGTEDXXXXXXXXXXXXXXXRLAQEYNPDVVLMDLVMDGMD 66 IKVLLVDDHEMVRIG++A L +D +A E PD++LMDLVMD MD Sbjct: 2 IKVLLVDDHEMVRIGVSAYLSVQDDMEVVGEAENGREGADMALELRPDIILMDLVMDEMD 61 Query: 67 GIETTRQLLKLYPDCKVIVLTSYLDDEKMYPVIEAGAFSYLLKTSRASEVADAIRAAARG 126 GIE T++++K + + K+I++TS++DDEK+YP +EAGA SY+LKTS ASE+ADAIRA G Sbjct: 62 GIEATKEIMKNWKEAKIIIVTSFIDDEKVYPALEAGASSYMLKTSTASEIADAIRATYGG 121 Query: 127 QSVLESQVASKMMNRFRSNAKSSEAPAYKELTEREMEVLKLLAQGRSNQDIADQLIIGIK 186 SVLE +V KMM R + E + +LT RE E+L L+A+G+SNQ+IAD+L I +K Sbjct: 122 DSVLEPEVTGKMMQRLTAK---PEKNLHDDLTNRENEILLLIAEGKSNQEIADELFITLK 178 Query: 187 TVKFHVTNILAKLGVEDRTQAAIYAYKNGLAE 218 TVK HV+NIL+KL V+DRTQAAIYA+K+ L E Sbjct: 179 TVKTHVSNILSKLDVQDRTQAAIYAFKHDLVE 210 >SA1700 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 209 Score = 200 bits (509), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 103/213 (48%), Positives = 145/213 (68%), Gaps = 5/213 (2%) Query: 6 AIKVLLVDDHEMVRIGLAAVLGTEDXXXXXXXXXXXXXXXRLAQEYNPDVVLMDLVMDGM 65 IKVL VDDHEMVRIG+++ L T+ A E PD++LMDL+M+ M Sbjct: 2 TIKVLFVDDHEMVRIGISSYLSTQSDIEVVGEGASGKEAIAKAHELKPDLILMDLLMEDM 61 Query: 66 DGIETTRQLLKLYPDCKVIVLTSYLDDEKMYPVIEAGAFSYLLKTSRASEVADAIRAAAR 125 DG+E T Q+ K P KV++LTS+++D+++Y ++AG SY+LKT+ A ++ADA+R +R Sbjct: 62 DGVEATTQIKKDLPQIKVLMLTSFIEDKEVYRALDAGVDSYILKTTSAKDIADAVRKTSR 121 Query: 126 GQSVLESQVASKMMNRFRSNAKSSEAPAYKELTEREMEVLKLLAQGRSNQDIADQLIIGI 185 G+SV E +V KM NR + A+ Y+ LTEREME+L L+A+G SNQ+IA I I Sbjct: 122 GESVFEPEVLVKMRNRMKKRAE-----LYEMLTEREMEILLLIAKGYSNQEIASASHITI 176 Query: 186 KTVKFHVTNILAKLGVEDRTQAAIYAYKNGLAE 218 KTVK HV+NIL+KL V+DRTQA IYA+++ L + Sbjct: 177 KTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ 209 >SPy1621 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 213 Score = 189 bits (481), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 101/210 (48%), Positives = 140/210 (66%), Gaps = 6/210 (2%) Query: 7 IKVLLVDDHEMVRIGLAAVLGTEDXXXXXXXXXXXXXXXRLAQEYNPDVVLMDLVMDGMD 66 IKV+LVDDHEMVR+GL + L + LA PDV++MDLVM + Sbjct: 4 IKVILVDDHEMVRMGLKSFLNLQADIDVVGEASNGREGVDLALALKPDVLVMDLVMPELG 63 Query: 67 GIETTRQLLKLYPDCKVIVLTSYLDDEKMYPVIEAGAFSYLLKTSRASEVADAIRAAARG 126 G+E T ++LK + + KV+VLTSYLD+EK+YPVI+AGA Y+LKTS A+E+ +AIR ++G Sbjct: 64 GVEATLEVLKKWKEAKVLVLTSYLDNEKIYPVIDAGAKGYMLKTSSAAEILNAIRKVSKG 123 Query: 127 QSVLESQVASKMMNRFRSNAKSSEAPAYKELTEREMEVLKLLAQGRSNQDIADQLIIGIK 186 + +E++V K+ A ++ELT RE ++L LLA+G NQ IAD+L I +K Sbjct: 124 ELAIETEVDKKI------KAHDQHPDLHEELTAREYDILHLLAKGYDNQTIADELFISLK 177 Query: 187 TVKFHVTNILAKLGVEDRTQAAIYAYKNGL 216 TVK HV+NILAKL V DRTQA +YA+++ L Sbjct: 178 TVKTHVSNILAKLEVGDRTQAVVYAFRHHL 207 >SP0387 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 210 Score = 184 bits (467), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 97/210 (46%), Positives = 139/210 (66%), Gaps = 6/210 (2%) Query: 7 IKVLLVDDHEMVRIGLAAVLGTEDXXXXXXXXXXXXXXXRLAQEYNPDVVLMDLVMDGMD 66 +K+LLVDDHEMVR+GL + +D LA E PDV++MD+VM M+ Sbjct: 1 MKILLVDDHEMVRLGLKSYFDLQDDVEVVGEASNGSQGIDLALELRPDVIVMDIVMPEMN 60 Query: 67 GIETTRQLLKLYPDCKVIVLTSYLDDEKMYPVIEAGAFSYLLKTSRASEVADAIRAAARG 126 GI+ T +LK +P+ K++++TSYLD+EK+ PV++AGA Y+LKTS A E+ A+ A G Sbjct: 61 GIDATLAILKEWPEAKILIVTSYLDNEKIMPVLDAGAKGYMLKTSSADELLHAVSKVAAG 120 Query: 127 QSVLESQVASKMMNRFRSNAKSSEAPAYKELTEREMEVLKLLAQGRSNQDIADQLIIGIK 186 + +E +V+ K+ + N ++ELT RE +VL+L+A+G NQ IAD L I +K Sbjct: 121 ELAIEQEVSKKV--EYHRN----HMELHEELTARERDVLQLIAKGYENQRIADDLFISLK 174 Query: 187 TVKFHVTNILAKLGVEDRTQAAIYAYKNGL 216 TVK HV+NILAKL V DRTQAA+YA+++ L Sbjct: 175 TVKTHVSNILAKLEVSDRTQAAVYAFQHHL 204 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.317 0.132 0.349 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 12,887,238 Number of extensions: 410257 Number of successful extensions: 2004 Number of sequences better than 1.0e-05: 250 Number of HSP's gapped: 1924 Number of HSP's successfully gapped: 250 Length of query: 218 Length of database: 38,378,431 Length adjustment: 102 Effective length of query: 116 Effective length of database: 26,614,363 Effective search space: 3087266108 Effective search space used: 3087266108 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 113 (48.1 bits)