BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0471.0012.p (233 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC0453 [V] COG1136 ABC-type antimicrobial peptide transport sys... 262 3e-70 Cgl2501 [V] COG1136 ABC-type antimicrobial peptide transport sys... 225 4e-59 MA1668 [V] COG1136 ABC-type antimicrobial peptide transport syst... 215 5e-56 AF1469 [V] COG1136 ABC-type antimicrobial peptide transport syst... 214 1e-55 lin0233 [V] COG1136 ABC-type antimicrobial peptide transport sys... 212 4e-55 >CAC0453 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 262 bits (670), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 14/222 (6%), Positives = 37/222 (16%), Gaps = 1/222 (0%) Query: 1 MPILKIEHLKKYYGKDPQTTVKALDDVSLSVEKGEFLAIVGTSGSGKSTLLHMLGGLDRA 60 M I + + D + + + R Sbjct: 1 MDQAGIIRDLLIWLEGH-LDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRL 59 Query: 61 TAGKVIVDGNDIFAMSDEKLTIFRRRSVGFIFQSYNLVPILNVLENILLPIELDGGRVDQ 120 + V + + F + + + Sbjct: 60 SKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLR 119 Query: 121 AYLDEVIRALGLQEKIHNLPSNLSGGQQQRVAIARALATKPSIILADEPTGNLDSKTSQE 180 + + + L I+ D Sbjct: 120 LGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLY 179 Query: 181 VLILLKQLSEKFNQTIVMITHNESIAQTADRIIRIEDGHIVS 222 L + +K ++ V T + Q ++ + Sbjct: 180 GLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQG 221 >Cgl2501 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 225 bits (574), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 14/215 (6%), Positives = 35/215 (16%), Gaps = 1/215 (0%) Query: 8 HLKKYYGKDPQTTVKALDDVSLSVEKGEFLAIVGTSGSGKSTLLHMLGGLDRATAGKVIV 67 + + ++ L S + A + Sbjct: 50 IGAYIRARR-LSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPE 108 Query: 68 DGNDIFAMSDEKLTIFRRRSVGFIFQSYNLVPILNVLENILLPIELDGGRVDQAYLDEVI 127 + L+ + L I + + + + Sbjct: 109 WSAFGIRPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFL 168 Query: 128 RALGLQEKIHNLPSNLSGGQQQRVAIARALATKPSIILADEPTGNLDSKTSQEVLILLKQ 187 + + Q + T + AD Q ++ Sbjct: 169 GNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFT 228 Query: 188 LSEKFNQTIVMITHNESIAQTADRIIRIEDGHIVS 222 I + R + I Sbjct: 229 YEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIER 263 >MA1668 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 215 bits (547), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 13/222 (5%), Positives = 40/222 (18%), Gaps = 4/222 (1%) Query: 1 MPILKIEHLKKYYGKDPQTTVKALDDVSLSVEKGEFLAIVGTSGSGKSTLLHMLGGLDRA 60 I + + + D Q K + L ++ Sbjct: 5 GIIRDLLIWLEGH-LD-QPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 Query: 61 TAGKVIVDGNDIFAMSDEKLTIFRRRSVGFIFQSYNLVPILNVLENILLPIELDGGRVDQ 120 + + + + + F Q + R+ + Sbjct: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 Query: 121 A--YLDEVIRALGLQEKIHNLPSNLSGGQQQRVAIARALATKPSIILADEPTGNLDSKTS 178 + + + S Q + + + Sbjct: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLN 182 Query: 179 QEVLILLKQLSEKFNQTIVMITHNESIAQTADRIIRIEDGHI 220 + K ++ T + + ++ G Sbjct: 183 ETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEY 224 >AF1469 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 214 bits (545), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 10/223 (4%), Positives = 35/223 (15%), Gaps = 3/223 (1%) Query: 1 MPILKIEHLKKYYGKDPQTTVKALDDVSLSVEKGEFLAIVGTSGSGKSTLLHMLGGLDRA 60 M I + + D + + + R Sbjct: 1 MDQAGIIRDLLIW-LEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRL 59 Query: 61 TAGKVIVDGNDIFAMSDEKLTIFRRRSVGFIFQSYNLVPILNVLENILLPIELDG-GRVD 119 + V + + F + + + Sbjct: 60 SKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLR 119 Query: 120 -QAYLDEVIRALGLQEKIHNLPSNLSGGQQQRVAIARALATKPSIILADEPTGNLDSKTS 178 + + + L++ + ++++ R + Sbjct: 120 LGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLY 179 Query: 179 QEVLILLKQLSEKFNQTIVMITHNESIAQTADRIIRIEDGHIV 221 Q + + + A Sbjct: 180 GLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGG 222 >lin0233 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 212 bits (540), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 18/222 (8%), Positives = 46/222 (20%), Gaps = 6/222 (2%) Query: 2 PILKIEHLKKYYGKDPQTTVKALDDVSLSVEKGEFLAIVGTSGSGKSTLLHMLGGLDRAT 61 + + L G Q + + + + L + +G + ++ + Sbjct: 4 AGIIRDLLIWLEGHLDQP-LSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 Query: 62 AGKVIVDGNDIFAMSDEKLTIFRRRSVGFIFQSYNLVPILNVLENILLPIELDGGRV--- 118 A + + I ++ + ++ + + P L + Sbjct: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 Query: 119 DQAYLDEVIRALGLQEKIHNLPSNLSGGQQQRVAIARALATKPSIILADEPTGNLDSKTS 178 L I S +Q L + PT Sbjct: 123 FTMPE-HKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGL 181 Query: 179 QEVLILLKQLSEKFNQTIVMITHNESIAQTADRIIRIEDGHI 220 E + E+ + + Sbjct: 182 NETRPSQDKDDEQEV-FYTTALAQDQADGYVLTGHPVMLQGG 222 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.316 0.135 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 16,767,580 Number of extensions: 711231 Number of successful extensions: 18784 Number of sequences better than 1.0e-05: 2230 Number of HSP's gapped: 15562 Number of HSP's successfully gapped: 2520 Length of query: 233 Length of database: 38,378,431 Length adjustment: 103 Effective length of query: 130 Effective length of database: 26,499,029 Effective search space: 3444873770 Effective search space used: 3444873770 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 114 (48.5 bits)