BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0471.0011.p
         (842 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC0454 [V] COG0577 ABC-type antimicrobial peptide transport sys...    81   6e-15

>CAC0454 [V] COG0577 ABC-type antimicrobial peptide transport system,
           permease component
          Length = 289

 Score = 81.3 bits (199), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 0/749 (0%), Positives = 0/749 (0%), Gaps = 79/749 (10%)

Query: 127 EGGLPAAENEVVLNTWVMDKLGIPHSLGQKATLDIDIGERVVRQDFIVSGYYDADKNLSI 186
              L       V        L        +                    Y   +     
Sbjct: 130 FVTLEDTPLIGVT-QSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETRP-- 186

Query: 187 AGLAFVSEAWVQKNLSSIDPVKSKASGSYVNTTELSVMFSNAVDIEK--KLNKVLADTGL 244
                  +   Q+   +       A                            +      
Sbjct: 187 --SQDKDD--EQEVFYTTA----LAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQE 238

Query: 245 DVPIGINWAYTTSSLTDNITKVVPYLAVILIIMLSGYLLIYNIFYISVVRDVKFYGLLKA 304
                +    T   + +   +    +                                  
Sbjct: 239 ---FILTVYGTCMPMLNLTRRKGQDIERY--                              293

Query: 305 IGTTPRQLKKIITIQSQXXXXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXVETSYSNSPW 363
                                                                       
Sbjct: 294                                                              353

Query: 364 IFIGGAVFAYLTVWIAASKPGRMAARIAPVEAVRFAGVSAKRKVNKRSKRG--AKLYGMA 421
                                                                       
Sbjct: 354 --                                                           411

Query: 422 FANLFRNKKKXXXXXXXXXXXXXXXXXXXXVISSLDVNKYLSTFLSGDMVIRNKAIVLSA 481
                                                                       
Sbjct: 412 -------                                                      464

Query: 482 GEQSGDPYKLSGPFISKLGKIDGVERVDSVYFKFENYTIDDTIRAALKPL----AEGAPS 537
                                                                       
Sbjct: 465 ------------                                                 512

Query: 538 EPALTWVFKNNFI--QLDLY--GIDAGWYELVQKDVLEGSFDPQKFASGNYVLVTTSIK- 592
                                                                       
Sbjct: 513 --                                                           570

Query: 593 ---AGDTDKSYYHPGDHI---EYKGLGKSYEVMAV-LNYNALY-----AATTQVYSPYGY 640
                                                                       
Sbjct: 571                                                              630

Query: 641 NA--FFPSSELTRKLPAGSGPPMALSATLHVDP-AKLDSVMQTTKSLAASSEELVFKSRE 697
                                                                       
Sbjct: 631 --                                                           688

Query: 698 DYRQELGGFIRIFQTVGYGLSFVIALIGVLNYINTVITGVIARRNEFALLESIGMTKPQL 757
                                                                       
Sbjct: 689                                                              748

Query: 758 KKVLVYEGLFNVLLTVSIISTLGVFLTYSISKSIADSMAFTVFHMGWLPFILAVPV---- 813
                                                                       
Sbjct: 749 -----                                                        803

Query: 814 LAAIAYTVTLSSYRMLSKDTIVERLRQTE 842
                                        
Sbjct: 804                               832


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.319    0.135    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 54,668,584
Number of extensions: 2163683
Number of successful extensions: 4304
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4306
Number of HSP's successfully gapped: 2
Length of query: 842
Length of database: 38,378,431
Length adjustment: 115
Effective length of query: 727
Effective length of database: 25,115,021
Effective search space: 18258620267
Effective search space used: 18258620267
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 120 (50.8 bits)