BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0471.0009.p (179 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Cgl0985 [R] COG0431 Predicted flavoprotein 185 3e-47 mll2599 [R] COG0431 Predicted flavoprotein 131 4e-31 Cgl2851 [R] COG0431 Predicted flavoprotein 113 2e-25 mll5191 [R] COG0431 Predicted flavoprotein 111 5e-25 SMc00183 [R] COG0431 Predicted flavoprotein 83 3e-16 >Cgl0985 [R] COG0431 Predicted flavoprotein Length = 188 Score = 185 bits (470), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 96/181 (53%), Positives = 118/181 (65%), Gaps = 8/181 (4%) Query: 6 IGIILGSTRQGRLSPQVGEWVKGIADQRGDANYEIVDIADFKLPLLGEA-------DASE 58 I II GSTR GR++ V WV A +R DA YE+VDIADF P+L EA A+E Sbjct: 4 IAIITGSTRPGRVNIDVANWVLERAQERNDAQYELVDIADFNFPVLDEAMPAGYGQYANE 63 Query: 59 QAGRWNDKLNALDGFVFIVAEYNHSITGALKNALDYAREAWNNKAAGIVSYGSVGGARAA 118 W K+ DGF+F+ EYNHS+ AL NAL Y WNNKAAGIVSYGS G RAA Sbjct: 64 HTKAWAAKIAEFDGFIFVTGEYNHSVPAALTNALSYLSAEWNNKAAGIVSYGSAMGVRAA 123 Query: 119 EHLRGILGELSIADVRIHPALSLFTDFENGQTFKPAELHLTNVNGMLDQVVAWSGALKTL 178 EHLRGIL EL IA V+ LS+FTDFE FKP+E +++V+ ML+Q+V W+ A+ T+ Sbjct: 124 EHLRGILSELQIAHVQKTGLLSIFTDFEY-PNFKPSEQGISSVDAMLEQLVVWTKAMSTI 182 Query: 179 R 179 R Sbjct: 183 R 183 >mll2599 [R] COG0431 Predicted flavoprotein Length = 201 Score = 131 bits (330), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 77/180 (42%), Positives = 92/180 (51%), Gaps = 9/180 (5%) Query: 1 MSALNIGIILGSTRQGRLSPQVGEWVKGIADQRGDANYEIVDIADFKLPLLGEADAS--- 57 MS I II+GSTR R + +W+ IA D + E+VD+ DF LP E +S Sbjct: 1 MSKPKIAIIVGSTRAARFADVPTQWIAKIAKSHADIDVEVVDLRDFPLPFFDEVASSAWV 60 Query: 58 ----EQAGRWNDKLNALDGFVFIVAEYNHSITGALKNALDYAREAWNNKAAGIVSYGSVG 113 E A RW K+ DGF+F AEYNH T LKNA+DYA WN K AG V YGSVG Sbjct: 61 PSTNEVAQRWQKKVAEFDGFIFTAAEYNHGPTAVLKNAIDYAANEWNKKPAGFVGYGSVG 120 Query: 114 GARAAEHLRGILGELSIADVR--IHPALSLFTDFENGQTFKPAELHLTNVNGMLDQVVAW 171 GARA E LR EL +A V+ +H A F G+ HL L VAW Sbjct: 121 GARAVEQLRLHAVELQMAPVKSAVHIAWGDFLAVRQGEKKLEDLDHLNQAASALVNDVAW 180 >Cgl2851 [R] COG0431 Predicted flavoprotein Length = 181 Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 66/181 (36%), Positives = 94/181 (51%), Gaps = 18/181 (9%) Query: 4 LNIGIILGSTRQGRLSPQVGEWVKGIADQRG-----DANYEIVDIADFKLPLL------G 52 + IG+ILGS R+GR V +WV +Q G D +E++D+ F +PLL G Sbjct: 1 MKIGVILGSIREGRFGQGVADWV---MEQIGAYDAPDVEFELIDLKAFNVPLLESATVPG 57 Query: 53 EADASEQAGR---WNDKLNALDGFVFIVAEYNHSITGALKNALDYAREAWNNKAAGIVSY 109 AD R W+ ++A D F+FI EYNH + GA KNA D W NK G +SY Sbjct: 58 SADKQYDDPRVTAWSQAIDACDAFLFITPEYNHGVPGAFKNAYDILGNEWLNKTVGFISY 117 Query: 110 GSVGGARAAEHLRGILGELSIADVRIHPALSLFTDFENGQTFKPAELHLTNVNGMLDQVV 169 G+V G R E R I+ ++ D+R + S FT+ NG TF P + + +LD ++ Sbjct: 118 GAVEGIRVVEQWRQIVATFNMYDIRSQLSFSTFTENNNG-TFAPNDRRPGELIRLLDSLL 176 Query: 170 A 170 Sbjct: 177 T 177 >mll5191 [R] COG0431 Predicted flavoprotein Length = 203 Score = 111 bits (278), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 66/185 (35%), Positives = 95/185 (51%), Gaps = 11/185 (5%) Query: 5 NIGIILGSTRQGRLSPQVGEWVKGIADQRGDANYEIVDIADFKLPLLGEAD-------AS 57 + II+GSTR GR P EW+ A + G + DIA F LP+L E + Sbjct: 18 QLNIIIGSTRPGRAGPVFAEWLDTFAREHGKFEPVLTDIAAFHLPVLDEPHHPRLGNYQN 77 Query: 58 EQAGRWNDKLNALDGFVFIVAEYNHSITGALKNALDYAREAWNNKAAGIVSYGSV-GGAR 116 + W+ ++A D FVF+ EYN+ A+ NA+DY W K A + SYG V GG R Sbjct: 78 DHTKAWSKAIDAADAFVFVAPEYNYFAAPAIVNAIDYLLREWKYKPAAVFSYGGVSGGLR 137 Query: 117 AAEHLRGILGELSIADVRIHPALSLFTDF--ENGQTFKPAELHLTNVNGMLDQVVAWSGA 174 AA+ L+ +L + I + AL ++ ENG F +E + MLD+++ WS A Sbjct: 138 AAQALKPLLTSVGIMPIPEGVALPMYQKLLDENG-AFNASEQVIGGAKAMLDELLRWSEA 196 Query: 175 LKTLR 179 LK +R Sbjct: 197 LKPMR 201 >SMc00183 [R] COG0431 Predicted flavoprotein Length = 190 Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 56/180 (31%), Positives = 83/180 (46%), Gaps = 8/180 (4%) Query: 4 LNIGIILGSTRQGRLSPQVGEWVKGIADQRGDANYEIVDIADFKLPLLGEADASEQAGRW 63 + + +I GS RQGR V W+ + + I+D K D S W Sbjct: 5 MTLALIYGSARQGRFCDTVASWLIRELETSDVFSLTIIDPVRMKS---ARGDKSAGPAEW 61 Query: 64 ND-KLNALDGFVFIVAEYNHSITGALKNALDYAREAWNNKAAGIVSY-GSVGGARAAEHL 121 + K+ D F+ I EYNH ALK +D E W+ K VSY G+ GG RA E L Sbjct: 62 MERKVAEADAFIVITPEYNHGYPAALKEMIDAVYEPWHAKPVAFVSYGGASGGIRAVEQL 121 Query: 122 RGILGELSIADVRIHPALS-LFTDFE-NGQTFKPAELHLTNVNGMLDQVVAWSGALKTLR 179 R + GEL +R + + ++ F+ G +KP E+ + M+D++ W+ LK R Sbjct: 122 RQVFGELHAVTLRDGISFAKAWSKFDAAGNLYKPEEMR-APLFLMIDRLTWWARTLKYAR 180 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.135 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 13,990,082 Number of extensions: 579212 Number of successful extensions: 968 Number of sequences better than 1.0e-05: 13 Number of HSP's gapped: 955 Number of HSP's successfully gapped: 13 Length of query: 179 Length of database: 38,378,431 Length adjustment: 100 Effective length of query: 79 Effective length of database: 26,845,031 Effective search space: 2120757449 Effective search space used: 2120757449 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 112 (47.8 bits)