BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0471.0007.p
         (150 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PAB1938 [K] COG1522 Transcriptional regulators                         61   6e-10
VNG1377G [K] COG1522 Transcriptional regulators                        59   2e-09
BS_lrpB [K] COG1522 Transcriptional regulators                         56   2e-08
MA0924 [K] COG1522 Transcriptional regulators                          52   3e-07
BH0423 [K] COG1522 Transcriptional regulators                          51   7e-07

>PAB1938 [K] COG1522 Transcriptional regulators
          Length = 151

 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 63/127 (49%), Gaps = 4/127 (3%)

Query: 15  NGRLPHEEIGRLLHISRPTVHQRVSKLEKNGVIKGYRGIVDWGKLDXXXXXXXXXXXXXX 74
           +G+ P  EI ++  ++  T+H+R+ KL ++GVI+ +  IV+   L               
Sbjct: 19  DGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEALGYSMLAFILIKVKAG 78

Query: 75  XFRQAADQIIGIQIPGVSVLECQRMAGEWCMLLKVRVASPEQLTLLLDEILRIPDIKETS 134
            + + A  ++  +     ++E     G++ M++K+R  + E+L   LD I  IP ++ T 
Sbjct: 79  KYAEVASNLVKYE----EIMEVYETTGDYDMVVKIRTKNSEELNSFLDVIGSIPGVEGTH 134

Query: 135 TTFILST 141
           T  +L T
Sbjct: 135 TMIVLKT 141


>VNG1377G [K] COG1522 Transcriptional regulators
          Length = 149

 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 5/131 (3%)

Query: 15  NGRLPHEEIGRLLHISRPTVHQRVSKLEKNGVIKGYRGIVDWGKLDXXXXXXXXXXXXXX 74
           + R P  EI R + +S  TVH RVS+LE+ GVI+GY   VD   +               
Sbjct: 17  DARKPFSEIAREIDMSSATVHDRVSRLEEAGVIRGYHADVDPKAVGLGTTAFVGLRVEQG 76

Query: 75  XFRQAADQIIGIQIPGVSVLECQRMAGEWCMLLKVRVASPEQL-TLLLDEILRIPDIKET 133
              +  D++ GI+     V E     GEW ++L++     + L  L+ +EI  +     +
Sbjct: 77  REDETLDRLTGIE----GVREVNLTTGEWDVILRLVAEDTDHLRALMFEEIADMDGFARS 132

Query: 134 STTFILSTIYE 144
            T  +L T YE
Sbjct: 133 QTMVVLGTEYE 143


>BS_lrpB [K] COG1522 Transcriptional regulators
          Length = 149

 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 63/135 (46%), Gaps = 13/135 (9%)

Query: 15  NGRLPHEEIGRLLHISRPTVHQRVSKLEKNGVIKGYRGIVDWGKLDXXXXXXXXXXXXXX 74
           N R+  +EIG  +H++   V  R+ K+E NG+IK Y  +VD  K+               
Sbjct: 17  NARIQWKEIGEKIHMTGQAVGNRIKKMEDNGIIKAYSIVVDELKMGFSFTAFVFFFMNAY 76

Query: 75  XFRQAADQIIGIQIPGVSVLECQRMAGEWCMLLKVRVASPEQLTLLLDEILR-------- 126
                 D ++        + E  R++G+ C LLKV V S E L  LL+++L+        
Sbjct: 77  MH----DDLLKFIATRNEISEAHRVSGDACYLLKVTVHSQEVLNHLLNDLLKYGNYQLYL 132

Query: 127 -IPDIKETSTTFILS 140
            I ++K+   T ++S
Sbjct: 133 SIKEVKKHYNTSLMS 147


>MA0924 [K] COG1522 Transcriptional regulators
          Length = 163

 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 1/134 (0%)

Query: 15  NGRLPHEEIGRLLHISRPTVHQRVSKLEKNGVIKGYRGIVDWGKLDXXXXXXXXXXXXXX 74
           + R   EEI  L  +S   + Q ++KLE+ GVI+ Y+ IVDW  +               
Sbjct: 15  DARASPEEIAALTGMSAQEISQTIAKLEETGVIRHYKTIVDWDLIGENYVYAVIELKVTL 74

Query: 75  XFRQAADQIIGIQIPGVSVLECQRMAGEWCMLLKVRVASPEQLTLLLDE-ILRIPDIKET 133
              Q    I         V   + ++G++ + L VR  S + +   + E I  +  ++ T
Sbjct: 75  ERNQGYQAIAERIYKFPEVRSVRLLSGDYDISLTVRGKSMKDVAFFVAEKIATLDQVQST 134

Query: 134 STTFILSTIYEDGM 147
           ST F+L T  EDG+
Sbjct: 135 STHFVLKTYKEDGV 148


>BH0423 [K] COG1522 Transcriptional regulators
          Length = 144

 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 62/131 (47%), Gaps = 7/131 (5%)

Query: 15  NGRLPHEEIGRLLHISRPTVHQRVSKLEKNGVIKGYRGIVDWGKLDXXXXXXXXXXXXXX 74
           +GR+  +E+G  +++S P V +RV ++E  G+IK Y   +D  K+               
Sbjct: 17  DGRISMKELGTKINMSSPAVRERVKQMESYGIIKNYTVAIDLTKVGYPVSCLIEATVKHG 76

Query: 75  XFRQAADQIIGIQIPGVSVLECQRMAGEWCMLLKVRVASPEQLTLLLDEILRIPDIKETS 134
            + +    + G+     +V  C R+AG  C ++K   A  E L+ +   I ++    ET 
Sbjct: 77  EYSRFKQVVEGMN----NVEFCHRIAGRACFMIK---AYMEDLSKVEAFIEQLSPFAETV 129

Query: 135 TTFILSTIYED 145
           T  +LST+  D
Sbjct: 130 THVVLSTLDTD 140


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.322    0.141    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 8,637,073
Number of extensions: 253380
Number of successful extensions: 839
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 850
Number of HSP's successfully gapped: 8
Length of query: 150
Length of database: 38,378,431
Length adjustment: 97
Effective length of query: 53
Effective length of database: 27,191,033
Effective search space: 1441124749
Effective search space used: 1441124749
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)