BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0471.0005.p
         (164 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_yuaC [K] COG1510 Predicted transcriptional regulators               98   5e-21
BS_yvbF [K] COG1510 Predicted transcriptional regulators               78   7e-15
BS_yvaV [K] COG1510 Predicted transcriptional regulators               75   3e-14

>BS_yuaC [K] COG1510 Predicted transcriptional regulators
          Length = 180

 Score = 98.2 bits (243), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 62/161 (38%), Positives = 92/161 (57%), Gaps = 1/161 (0%)

Query: 1   MIDAIAQTMDLYGANYSFGQLYGIMFFEDKPMTLEEMKQVMNMSKSNMSYGVRSLIASRM 60
           +ID+IA+TMDLYG   S G LYG M+  D+ MTL+EM++ + MSK +MS GV+ L    +
Sbjct: 17  VIDSIAETMDLYGITRSVGILYGTMYMRDE-MTLDEMREELQMSKPSMSTGVKKLQDLNV 75

Query: 61  VTXXXXXXXXXXXYVAETDFFQAFKNFFSLKLQREIDVMQEAMSTVMPELQALIQAADTP 120
           V            +VAE DFF+ F NFF  K +RE+ V   A+     +LQ ++   D  
Sbjct: 76  VKKTFHRGIRKHTFVAEKDFFKFFTNFFPPKWEREVQVNVTAIEEAQADLQKVLCKEDLD 135

Query: 121 EEERQACLRDLDKLQHAVEYYAWLQRFVSGLEEGEFFGRLP 161
           E+ +   L+  D+L+ +  YY WL+R    ++ GE F  +P
Sbjct: 136 EDIKNEALQLYDQLESSKAYYDWLKRLAESVQTGEIFKFIP 176


>BS_yvbF [K] COG1510 Predicted transcriptional regulators
          Length = 185

 Score = 77.8 bits (190), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 79/162 (48%), Gaps = 2/162 (1%)

Query: 1   MIDAIAQTMDLYGANYSFGQLYGIMFFEDKPMTLEEMKQVMNMSKSNMSYGVRSLIASRM 60
           +I+ IA+ M  +G   + G++ GI++   KPMTL E+ +   MSK+ MS  VR +I + +
Sbjct: 16  LIEKIAENMHTFGMPSTVGRVLGIIYMNRKPMTLSELSEATGMSKTRMSQVVREMIDANI 75

Query: 61  VTXXXXXXXXXXXYVAETDFFQAFKNFFSLKLQREIDVMQEAMSTVMPELQALIQAAD-T 119
                        Y  E D++Q F + F+    + +   +     +  EL  L+Q    T
Sbjct: 76  AEKVFEKGVRKDLYDVEQDYYQTFISLFAANWTKVVSKNKVLYKKLNRELSDLLQRDGLT 135

Query: 120 PEEERQACLRDLDKLQHAVEYYAWLQRFVSGLEEGEFFGRLP 161
           PE E +   + L++L+  + YY WL R +   E  E F  +P
Sbjct: 136 PEAEEKVN-QLLNELKEWLHYYDWLSRLIEFFESEEVFRYVP 176


>BS_yvaV [K] COG1510 Predicted transcriptional regulators
          Length = 180

 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 76/160 (47%), Gaps = 1/160 (0%)

Query: 2   IDAIAQTMDLYGANYSFGQLYGIMFFEDKPMTLEEMKQVMNMSKSNMSYGVRSLIASRMV 61
           I+ IA+ M  +G   + G++ GI++   KPMTL E+ +   MSK+ MS  VR ++ + + 
Sbjct: 20  IERIAENMHAFGMPSTVGRVLGIIYMNRKPMTLTELSEATGMSKTRMSQVVREMLDANIA 79

Query: 62  TXXXXXXXXXXXYVAETDFFQAFKNFFSLKLQREIDVMQEAMSTVMPELQALIQAADTPE 121
                       Y  E D++Q F   FS    + +   +     +  EL +++    TPE
Sbjct: 80  EKVFEKGVRKDLYEVEQDYYQTFITLFSATWSKVVSKNKMMHKKLNRELLSVLDEELTPE 139

Query: 122 EERQACLRDLDKLQHAVEYYAWLQRFVSGLEEGEFFGRLP 161
            E +     L +L+  ++YY WL R +   E  + F  +P
Sbjct: 140 AEEKVN-ELLKELKEWLDYYNWLSRLIEFFESEDIFKYVP 178


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.322    0.135    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 10,457,483
Number of extensions: 372124
Number of successful extensions: 633
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 631
Number of HSP's successfully gapped: 4
Length of query: 164
Length of database: 38,378,431
Length adjustment: 98
Effective length of query: 66
Effective length of database: 27,075,699
Effective search space: 1786996134
Effective search space used: 1786996134
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 111 (47.4 bits)