BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0471.0003.p (278 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin1843 [G] COG0395 ABC-type sugar transport system, permease co... 161 1e-39 all4824 [G] COG0395 ABC-type sugar transport system, permease co... 155 5e-38 lin0219 [G] COG0395 ABC-type sugar transport system, permease co... 154 2e-37 SMb20233 [G] COG0395 ABC-type sugar transport system, permease c... 152 7e-37 TM0598 [G] COG0395 ABC-type sugar transport system, permease com... 149 4e-36 >lin1843 [G] COG0395 ABC-type sugar transport system, permease component Length = 276 Score = 161 bits (407), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 84/247 (34%), Positives = 137/247 (55%), Gaps = 4/247 (1%) Query: 27 WMVTSALKTNDEIWRSPPTLWPEVPLWGNFSAAWNEAPFARYMGNSIFVAASIVILQIIN 86 WMV S+LKT+ EI + PPT+WPE NF+ + E FA Y+ N++ + +N Sbjct: 32 WMVLSSLKTDAEILKIPPTIWPETFTLDNFTKLFTEMDFAIYLKNTLIIVFFSFFGLFLN 91 Query: 87 SGMMAYALTHMKFRLKGLFAGVILFGYMVPATAVYLPGYLVLSELHLLNSYAGLILSNCV 146 + M Y KF+ K ++L M+P +P YL+L+ L N+ G++L V Sbjct: 92 A-MAGYGFAKFKFKGKNKLFYLVLATMMIPGQVTMIPVYLLLNAAGLTNTMTGIVLPGLV 150 Query: 147 SIFAIFLIRQAFLQVSHELVEAGEVDGASHMRILWTVLVPVTRSSFAVLALITFIDQYNN 206 F IFL RQ +S +L+EA +DGAS I W +++P++R AV ++TFI +N+ Sbjct: 151 GAFGIFLFRQFMSTISDDLLEAARLDGASEFYIFWRIVIPISRPVLAVQGILTFIAGWNS 210 Query: 207 YFWPMLITKNPDLQLVSAGLRSFFVEGGAYGLQWPLIMAASAFTIAPLLLVFLLAQKTIM 266 + WP++I + +S GL+ + G YG + L MA + F + P++L+F+ QK I+ Sbjct: 211 FLWPLIIANDEKFYTLSVGLQ---LLKGQYGSNYALQMAGATFMVIPIILIFMTFQKYIL 267 Query: 267 QSVNMTA 273 + N++ Sbjct: 268 KGFNVSG 274 >all4824 [G] COG0395 ABC-type sugar transport system, permease component Length = 279 Score = 155 bits (393), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 81/243 (33%), Positives = 139/243 (57%), Gaps = 4/243 (1%) Query: 27 WMVTSALKTNDE-IWRSPPTLWPEVPLWGNFSAAWNEAPFARYMGNSIFVAASIVILQII 85 W++++ALK+ E I++SPP L P P NF WN PF +Y+ NS V+ V L ++ Sbjct: 32 WLISTALKSPTENIFQSPPQLLPNQPTVDNFFKVWNSLPFGQYLYNSTLVSVLTVGLNLL 91 Query: 86 NSGMMAYALTHMKFRLKGLFAGVILFGYMVPATAVYLPGYLVLSELHLLNSYAGLILSNC 145 + AY L + F + I+ M+P V +P Y++ +L L N+Y G++ + Sbjct: 92 FCSLAAYPLARLSFPGRDWIFIAIVSTIMIPFQIVMIPLYILTVQLGLRNTYLGMMFPSL 151 Query: 146 VSIFAIFLIRQAFLQVSHELVEAGEVDGASHMRILWTVLVPVTRSSFAVLALITFIDQYN 205 S F IFL+RQAF+ V E+ EA +DG+S + + W +++P R + LA+ FI ++ Sbjct: 152 ASAFGIFLLRQAFMGVPKEIEEAARMDGSSELGLWWHIMLPAVRPALVTLAIFVFIGAWS 211 Query: 206 NYFWPMLITKNPDLQLVSAGLRSFFVEGGAYGLQWPLIMAASAFTIAPLLLVFLLAQKTI 265 ++ WP+++ ++ +L + G+ G + L W L+ A S IAP+LL+FL+ Q+ I Sbjct: 212 DFLWPLIVIQDENLYTLPLGVAKL---AGTFSLDWRLVAAGSVIAIAPVLLLFLILQRYI 268 Query: 266 MQS 268 +++ Sbjct: 269 VET 271 >lin0219 [G] COG0395 ABC-type sugar transport system, permease component Length = 282 Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 82/247 (33%), Positives = 138/247 (55%), Gaps = 3/247 (1%) Query: 27 WMVTSALKTNDEIWRSPPTLWPEVPLWGNFSAAWNEAPFARYMGNSIFVAASIVILQIIN 86 WM+++A KT PP P+ P NF+ + P R++ NS+ VA + Q++ Sbjct: 36 WMISTAFKTGAANMVLPPQFIPKEPTTANFTQVFEMFPMLRFLMNSVVVAVVTTLGQMLF 95 Query: 87 SGMMAYALTHMKFRLKGLFAGVILFGYMVPATAVYLPGYLVLSELHLLNSYAGLILSNCV 146 M AYA + F + + L MVPA +P ++++ + L+SYAGLI+ Sbjct: 96 CSMAAYAFARIPFWGRDKLFLLYLATMMVPAQVTMIPQFILMKQFGWLDSYAGLIVPALF 155 Query: 147 SIFAIFLIRQAFLQVSHELVEAGEVDGASHMRILWTVLVPVTRSSFAVLALITFIDQYNN 206 S+F FL+RQAF+ + EL EA +DGA+H I V++P+ + +FA L ++TF+ +N+ Sbjct: 156 SVFGTFLLRQAFMGIPKELEEAAFMDGANHFTIFRKVILPLAKPTFATLGILTFMQSWNS 215 Query: 207 YFWPMLITKNPDLQLVSAGLRSFFVEGGAYGLQWPLIMAASAFTIAPLLLVFLLAQKTIM 266 Y WP+++T + ++ + GL + G YG + L+MA ++ P+L V+L AQK + Sbjct: 216 YLWPLIVTSSQEMATLPLGLS---LLQGRYGTNYGLMMAGVLISVIPILAVYLFAQKYFI 272 Query: 267 QSVNMTA 273 Q + M+ Sbjct: 273 QGMAMSG 279 >SMb20233 [G] COG0395 ABC-type sugar transport system, permease component Length = 282 Score = 152 bits (383), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 84/248 (33%), Positives = 141/248 (56%), Gaps = 6/248 (2%) Query: 27 WMVTSALKTNDEIWRSPPTLWPEVPLWGNFSAAWNEAPFARYMGNSIFVAASIVILQIIN 86 W+V+ A K E + S L P+ P NF PF RYM NS V+A++ ++ + Sbjct: 39 WIVSIAFKPAAESFSS--NLIPQAPTLDNFIYVLTGVPFIRYMVNSFLVSATVTVVALFF 96 Query: 87 SGMMAYALTHMKFRLKGLFAGVILFGYMVPATAVYLPGYLVLSELHLLNSYAGLILSNCV 146 M YAL ++F + + I ++V + +P ++++ + +LNSYAGLI+ Sbjct: 97 HTMAGYALARLRFPGREVMFLSIFSTFLVSLPVIIVPLFVIVKAMGMLNSYAGLIIPAIF 156 Query: 147 SIFAIFLIRQAFLQVSHELVEAGEVDGASHMRILWTVLVPVTRSSFAVLALITFIDQYNN 206 + F IFL+RQ +L + E+ EA +DGA + RI W+V++P++R + LA++ F+ +N+ Sbjct: 157 NAFGIFLLRQYYLSLPKEIEEAARIDGAGYWRIYWSVILPLSRPIMSALAILFFLANWNS 216 Query: 207 YFWPMLITKNPDLQLVSAGLRSFFVEGGAYGLQWPLIMAASAFTIAPLLLVFLLAQKTIM 266 + WP+ IT +PDL +V G+ +F Y W +MAAS P L++F++ Q+ IM Sbjct: 217 FLWPLTITSDPDLWVVQLGIANF---KSQYSASWNYMMAASTIVAIPTLILFVIFQRQIM 273 Query: 267 QSVNMTAG 274 S+ T+G Sbjct: 274 DSLK-TSG 280 >TM0598 [G] COG0395 ABC-type sugar transport system, permease component Length = 277 Score = 149 bits (376), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 135/221 (61%), Gaps = 3/221 (1%) Query: 52 LWGNFSAAWNEAPFARYMGNSIFVAASIVILQIINSGMMAYALTHMKFRLKGLFAGVILF 111 ++ N+ AWN APF RY N+ FVA + +L+++ + + AYA + M F + G+ L Sbjct: 57 IFQNYVDAWNAAPFPRYYFNTFFVATTTTLLEVVTASLAAYAFSWMVFPGRDFIFGLFLA 116 Query: 112 GYMVPATAVYLPGYLVLSELHLLNSYAGLILSNCVSIFAIFLIRQAFLQVSHELVEAGEV 171 M+P + +P ++ +S+L +++Y LI+ VS+FAIFL+RQ FL + EL +A ++ Sbjct: 117 TMMIPGEVLLVPNFITISKLGWIDTYYALIIPWIVSVFAIFLLRQHFLTIPRELFDAAKI 176 Query: 172 DGASHMRILWTVLVPVTRSSFAVLALITFIDQYNNYFWPMLITKNPDLQLVSAGLRSFFV 231 DG SH R LW ++VP+++ + AL+ F+ +N + W +++T + + + GL++F Sbjct: 177 DGCSHWRFLWQMVVPLSKPAVITSALLKFVGSWNAFLWVLIVTNSEKYRTLPVGLQAF-- 234 Query: 232 EGGAYGLQWPLIMAASAFTIAPLLLVFLLAQKTIMQSVNMT 272 G Q+ L+MAA+ F+I P++++F+ QK +Q + T Sbjct: 235 -SSDVGTQYNLLMAAATFSILPVVILFIFTQKYFIQGIART 274 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.327 0.138 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 18,262,138 Number of extensions: 756588 Number of successful extensions: 2177 Number of sequences better than 1.0e-05: 148 Number of HSP's gapped: 2016 Number of HSP's successfully gapped: 148 Length of query: 278 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 173 Effective length of database: 26,268,361 Effective search space: 4544426453 Effective search space used: 4544426453 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 115 (48.9 bits)