BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0470.0039.p (297 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC0023 [K] COG0583 Transcriptional regulator 119 6e-27 cynR [K] COG0583 Transcriptional regulator 104 1e-22 HI0571 [K] COG0583 Transcriptional regulator 104 2e-22 BS_gltR [K] COG0583 Transcriptional regulator 101 2e-21 sll0998 [K] COG0583 Transcriptional regulator 100 2e-21 >CAC0023 [K] COG0583 Transcriptional regulator Length = 299 Score = 119 bits (298), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 74/255 (29%), Positives = 128/255 (50%), Gaps = 4/255 (1%) Query: 1 LNIENIEAFVYINHYGSFNKAADVLYISQPTVTARIHSLERELDCRVFDRVGKQINLTDK 60 ++ + + F+ ++ Y SF +AA L +Q TVT +I LE EL ++F+R+GK++ LT + Sbjct: 1 MDFKQLNTFIAVSKYQSFTEAAHSLNYAQSTVTTQIKILEEELQIKLFERIGKKVTLTYE 60 Query: 61 GRQFLPYAQQILQVYQSGKHQVQSKGLVPDELRIGSTISVSNYLMPQLLVHLKGAYPNLN 120 G++ LPYA+Q++++ K V L IG+ S+ +P++L + YP++ Sbjct: 61 GKKLLPYAKQMIKLSNEIKKVVLDDEKPSGTLTIGAAESLCVIRLPEILKEYRRLYPDVE 120 Query: 121 IKLTTAPTEVLIDKLKAKDIDLAF---IRKVVNPAIQAYPFCEDPISLYVYEGHPLAQAR 177 + L LK ID+AF + N I F ++P+ L Y HPL + Sbjct: 121 VSLKFGSCADFRHFLKDNIIDVAFSLGTKIDSNEFISEVEF-DEPMILLAYPDHPLVKKE 179 Query: 178 RASIQDIRRETLVFFECGSLDWLRLHRVFESMEQPPDIVYQVDNLETAKKLVLRKAGIAF 237 + +DI E LV E G + S P +V + +++ K+ + + GI Sbjct: 180 KIYPEDIVEEPLVLTEMGCSYRAAFENILRSYNIKPKLVLETGSVQAIKQFTMSRLGITL 239 Query: 238 LPALSVQEEVAAGTL 252 LP ++V+EE+ G L Sbjct: 240 LPKVAVEEEIKNGKL 254 >cynR [K] COG0583 Transcriptional regulator Length = 299 Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 65/238 (27%), Positives = 115/238 (48%), Gaps = 2/238 (0%) Query: 5 NIEAFVYINHYGSFNKAADVLYISQPTVTARIHSLERELDCRVFDRVGKQINLTDKGRQF 64 +I F+ + +GSF +AA L++SQP ++ +I LE L +FDR G+ I LTD G + Sbjct: 5 HINYFLAVAEHGSFTRAASALHVSQPALSQQIRQLEESLGVPLFDRSGRTIRLTDAGEVW 64 Query: 65 LPYAQQILQVYQSGKHQVQS-KGLVPDELRIGSTISVSNYLMPQLLVHLKGAYPNLNIKL 123 YA + LQ +GK + L LRI T + ++Y + L+ YP++ ++L Sbjct: 65 RQYASRALQELGAGKRAIHDVADLTRGSLRIAVTPTFTSYFIGPLMADFYARYPSITLQL 124 Query: 124 TTAPTEVLIDKLKAKDIDLAF-IRKVVNPAIQAYPFCEDPISLYVYEGHPLAQARRASIQ 182 E + D L ++D+ V +P ++A P + ++L V + HPLA + ++ Sbjct: 125 QEMSQEKIEDMLCRDELDVGIAFAPVHSPELEAIPLLTESLALVVAQHHPLAVHEQVALS 184 Query: 183 DIRRETLVFFECGSLDWLRLHRVFESMEQPPDIVYQVDNLETAKKLVLRKAGIAFLPA 240 + E LV ++ E P +V + +++ +L+ R + LPA Sbjct: 185 RLHDEKLVLLSAEFATREQIDHYCEKAGLHPQVVIEANSISAVLELIRRTSLSTLLPA 242 >HI0571 [K] COG0583 Transcriptional regulator Length = 301 Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 72/256 (28%), Positives = 128/256 (50%), Gaps = 18/256 (7%) Query: 1 LNIENIEAFVYINHYGSFNKAADVLYISQPTVTARIHSLERELDCRVFDRVGKQINLTDK 60 +NI ++E V ++ Y F +AAD +SQPT++ +I LE EL + +R +++ T Sbjct: 1 MNIRDLEYLVALSEYKHFRRAADSCNVSQPTLSGQIRKLEDELGIILLERTSRKVLFTQS 60 Query: 61 GRQFLPYAQQILQVYQSGKHQVQSKGL-VPDELRIGSTISVSNYLMPQLLVHLKGAYPNL 119 G + A+ +L+ + K ++G + L IG +V YL+P ++ LK A+P+L Sbjct: 61 GMLLVDQARTVLREVKLLKEMASNQGKEMTGPLHIGLIPTVGPYLLPYIVPMLKAAFPDL 120 Query: 120 NIKLTTAPTEVLIDKLKAKDIDLAFIRKVVNPAIQAY---PFCEDPISLYVYEGHPLAQA 176 + L A T L+++L+ +D A + V P +A+ P + + L V E HP AQ Sbjct: 121 EVFLYEAQTHQLLEQLETGRLDCAIVATV--PETEAFIEVPIFNEKMLLAVSEHHPWAQE 178 Query: 177 RRASIQDIRRETLVFFECG------SLDWLRLHRVFESMEQPPDIVYQVDNLETAKKLVL 230 + + + + ++ + G +LD+ E+ +Q +LET + +V Sbjct: 179 SKLPMNQLNGQEMLMLDDGHCLRNQALDYCFTAGAKENSH------FQATSLETLRNMVA 232 Query: 231 RKAGIAFLPALSVQEE 246 AGI F+P L+V E Sbjct: 233 ANAGITFMPELAVLNE 248 >BS_gltR [K] COG0583 Transcriptional regulator Length = 296 Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 117/240 (48%), Gaps = 5/240 (2%) Query: 1 LNIENIEAFVYINHYGSFNKAADVLYISQPTVTARIHSLERELDCRVFDRVGKQINLTDK 60 +NI+ ++ F+ GS +KAA L +Q VT +I LE +L ++F R + I LT Sbjct: 1 MNIQLLQVFLTTAREGSISKAALTLNYAQSNVTNKIQQLENDLQTKLFYRHSRGITLTPP 60 Query: 61 GRQFLPYAQQILQVYQSGKHQVQSKGLVPDELRIGSTISVSNYLMPQLLVHLKGAYPNLN 120 G+ + Y+++IL + + + LRIGS + + +PQLL H YPN++ Sbjct: 61 GQILVSYSEKILHTIEEARAAMGESSAPSGPLRIGSMETTAAVWLPQLLAHYNNLYPNVD 120 Query: 121 IKLTTAPTEVLIDKLKAKDIDLAFIRKVV-NPAIQAYPFCEDPISLYVYEGHPLAQARRA 179 + L T PTE I + +++ AFI + +P + ++ + L HP+ + Sbjct: 121 LNLVTGPTEQQIQAVLHYELNGAFISGPIEHPDLVQEKVLDEEMVLVTSASHPVI----S 176 Query: 180 SIQDIRRETLVFFECGSLDWLRLHRVFESMEQPPDIVYQVDNLETAKKLVLRKAGIAFLP 239 SIQD++ +T+V F G +L+ + + P + + LE V GI+ LP Sbjct: 177 SIQDVQTQTMVVFRKGCSYRAKLNHILQEEGLLPIKLMEFGILEAIIGCVSAGLGISLLP 236 >sll0998 [K] COG0583 Transcriptional regulator Length = 345 Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 70/266 (26%), Positives = 131/266 (49%), Gaps = 11/266 (4%) Query: 12 INHYGSFNKAADVLYISQPTVTARIHSLERELDCRVFDRVGKQINLTDKGRQFLPYAQQI 71 I GSF +AAD LY+SQP V+ ++ +LE++L +FDR G++ LT+ G L Y ++I Sbjct: 17 IASEGSFKRAADTLYVSQPAVSLQVQNLEKQLSVPLFDRGGRKAQLTEAGHLLLNYGEKI 76 Query: 72 LQVYQSGKHQVQS-KGLVPDELRIGSTISVSNYLMPQLLVHLKGAYPNLNIKLTTAPTEV 130 + + Q ++ + L L +G++ + YL+P+++ + YP++ ++L T Sbjct: 77 ITLCQETCRAIEDLQNLQGGTLIVGASQTTGTYLLPRMIGMFRQQYPDVTVQLQVHSTRR 136 Query: 131 LIDKLKAKDIDLAFIRKVVNPAIQ----AYPFCEDPISLYVYEGHPLAQARRASIQDIRR 186 + +DLA I V +Q P+ ED ++L + HPLAQA +D+ + Sbjct: 137 TAWGVANGQVDLAIIGGEVPAELQETLTVLPYAEDELALILPVLHPLAQAETIQKEDLYK 196 Query: 187 ETLVFFECGSLDWLRLHRVFESME---QPPDIVYQVDNLETAKKLVLRKAGIAFLPALSV 243 + + S + +V E + I +++++E K V G AF+ ++ Sbjct: 197 LKFISLDSQSTIRKVIDKVLSQGEIDTKRLKIEMELNSIEAIKNAVQSGLGAAFVSTTAI 256 Query: 244 QEEVAAGTLTRVEIAETEGISLRTSL 269 ++E+ L IA + + +R L Sbjct: 257 EKELEMNVL---HIAPIKNVEIRRVL 279 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.321 0.138 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 21,044,081 Number of extensions: 873884 Number of successful extensions: 2996 Number of sequences better than 1.0e-05: 1481 Number of HSP's gapped: 2924 Number of HSP's successfully gapped: 1481 Length of query: 297 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 191 Effective length of database: 26,153,027 Effective search space: 4995228157 Effective search space used: 4995228157 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 115 (48.9 bits)