BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0470.0037.p (293 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_ytmK [ET] COG0834 ABC-type amino acid transport/signal transd... 223 3e-58 BS_ytmJ [ET] COG0834 ABC-type amino acid transport/signal transd... 217 2e-56 lin2443 [ET] COG0834 ABC-type amino acid transport/signal transd... 213 2e-55 BS_yxeM [ET] COG0834 ABC-type amino acid transport/signal transd... 112 6e-25 CAC3325 [ET] COG0834 ABC-type amino acid transport/signal transd... 108 9e-24 >BS_ytmK [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Length = 270 Score = 223 bits (567), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 111/245 (45%), Positives = 168/245 (68%), Gaps = 7/245 (2%) Query: 51 TDAGQ--VTKIVVGTGTGFPQVCFIDENGKLTGFDVELLKDIDSRLPQYEFELQTMDFSN 108 T AGQ V I VGTGT FP +CFIDE G LTG+DVEL+K++D RLP Y+F +TM+FSN Sbjct: 28 TGAGQKKVQTITVGTGTQFPNICFIDEKGDLTGYDVELIKELDKRLPHYKFTFKTMEFSN 87 Query: 109 LLLSLDTKKIDLVAHVMEKNPEREQKYLFNTEPYAHWRNRIVVAKDNNSIKTLDDLKGKK 168 LL+SL K+D+VAH MEK+ ERE+K+LFN Y H+ +I V ++N++I+ ++DLKGK+ Sbjct: 88 LLVSLGQHKVDIVAHQMEKSKEREKKFLFNKVAYNHFPLKITVLQNNDTIRGIEDLKGKR 147 Query: 169 ALVGATSAQAQILENYNKEHDNAIKIVYQNGAANDTVSQISSGRVDATLAADFVLPVIDP 228 + ATS A +L+ +N+++ +I Y+ AN+T +Q+ SGR DAT++ F + + Sbjct: 148 VITSATSNGALVLKKWNEDNGRPFEIAYEGQGANETANQLKSGRADATISTPFAVDFQNK 207 Query: 229 QA--KLKASGPELSSADILYVLRKDDADSKTLADAIDGAIKELKADGTLAKLSTEWLGAD 286 + K K G LS+A + ++ K++ +TL+D ID A++E+ DGTL +LS +WLG D Sbjct: 208 TSTIKEKTVGNVLSNAKVYFMFNKNE---QTLSDDIDKALQEIIDDGTLKRLSLKWLGDD 264 Query: 287 VTADE 291 + ++ Sbjct: 265 YSKEQ 269 >BS_ytmJ [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Length = 269 Score = 217 bits (552), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 113/239 (47%), Positives = 153/239 (64%), Gaps = 11/239 (4%) Query: 55 QVTKIVVGTGTGFPQVCFIDENGKLTGFDVELLKDIDSRLPQYEFELQTMDFSNLLLSLD 114 Q ++VGTGT FP + F++E G+LTG+D+E++K ID LPQY FE +TMDFSNLL SL Sbjct: 31 QAQTVIVGTGTDFPNIAFLNEKGELTGYDIEVMKAIDKELPQYTFEFKTMDFSNLLTSLG 90 Query: 115 TKKIDLVAHVMEKNPEREQKYLFNTEPYAHWRNRIVVAKDNNSIKTLDDLKGKKALVGAT 174 KKID++AH M KN ERE+++L++ PY + I V +DN+ I TL DL GK +VGAT Sbjct: 91 NKKIDVIAHNMAKNKEREKRFLYHKVPYNYSPMYITVKEDNHKIHTLKDLHGKTVIVGAT 150 Query: 175 SAQAQILENYNKEHDNAIKIVYQNGAANDTVSQISSGRVDATLAADFVLPVIDPQAKL-- 232 S A + YNK H + I + Y +NDT +QI +GR DAT+A F +D Q K Sbjct: 151 SNAADYITKYNKTHGSPIHLKYAGQGSNDTANQIETGRADATIATPF---AVDFQNKTHA 207 Query: 233 ---KASGPELSSADILYVLRKDDADSKTLADAIDGAIKELKADGTLAKLSTEWLGADVT 288 K G L ++ ++ K S+TLAD D AIK+L+ +GTL KLS +WLGAD + Sbjct: 208 FRQKTVGDVLLDTEVYFMFNK---GSQTLADDTDQAIKKLEKNGTLKKLSRKWLGADYS 263 >lin2443 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Length = 269 Score = 213 bits (543), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 112/247 (45%), Positives = 161/247 (65%), Gaps = 7/247 (2%) Query: 47 PPAATDAGQVTKIVVGTGTGFPQVCFIDENGKLTGFDVELLKDIDSRLPQYEFELQTMDF 106 P AA +V I VGTGT FP VCF+DENGKLTG+DVEL+K+ID RLP Y+F+ +TMDF Sbjct: 27 PEAANK--KVQTITVGTGTQFPNVCFLDENGKLTGYDVELVKEIDKRLPGYKFKFKTMDF 84 Query: 107 SNLLLSLDTKKIDLVAHVMEKNPEREQKYLFNTEPYAHWRNRIVVAKDNNSIKTLDDLKG 166 SNLL+SL K+D+VAH MEK+ ERE+K+LFN Y ++ ++ V NNSI DL G Sbjct: 85 SNLLVSLGAGKVDIVAHQMEKSKEREKKFLFNDVAYNNFPLQLTVLDSNNSINGTKDLAG 144 Query: 167 KKALVGATSAQAQILENYNKEHDNAIKIVYQNGAANDTVSQISSGRVDATLAADFVLPVI 226 K+ + ATS A +L+ N+E N +I Y+ +ND +Q+ +GR DAT++ F + Sbjct: 145 KRVITSATSNGALVLKKINEEQGNNFEIAYEGQGSNDAANQLKTGRADATISTPFAVDFQ 204 Query: 227 DPQA--KLKASGPELSSADILYVLRKDDADSKTLADAIDGAIKELKADGTLAKLSTEWLG 284 + + K K G LS+A + ++L K+ + L+ +D A++ + DGTL KLS +WLG Sbjct: 205 NKTSPIKEKVVGDVLSNAKVYFMLGKNKTE---LSKDVDKALQSIIDDGTLKKLSEKWLG 261 Query: 285 ADVTADE 291 AD + ++ Sbjct: 262 ADYSKEQ 268 >BS_yxeM [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Length = 264 Score = 112 bits (280), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 82/235 (34%), Positives = 130/235 (55%), Gaps = 12/235 (5%) Query: 60 VVGTGTGFPQVCFIDENGKLTGFDVELLKDIDSRLPQYEFELQTMDFSNLLLSLDTKKID 119 V TG +P ENGKLTGFDVE+++ + ++ + + + ++FS L+ L T K+D Sbjct: 37 VGATGQSYP--FAYKENGKLTGFDVEVMEAVAKKIDM-KLDWKLLEFSGLMGELQTGKLD 93 Query: 120 LVAHVMEKNPEREQKYLFNTEPYAHWRNRIVVAKDNNSIKTLDDLKGKKALVGATSAQAQ 179 +++ + ER++ Y F T+PYA+ +IVV KDN IK++DDLKGK S A+ Sbjct: 94 TISNQVAVTDERKETYNF-TKPYAYAGTQIVVKKDNTDIKSVDDLKGKTVAAVLGSNHAK 152 Query: 180 ILENYNKEHDNAIKI-VYQNGAANDTVSQISSGRVDATLAADFVL--PVIDPQAKLKASG 236 LE +K+ D I I Y+ T+ ++ GRVDA + + VL + LK +G Sbjct: 153 NLE--SKDPDKKINIKTYETQEG--TLKDVAYGRVDAYVNSRTVLIAQIKKTGLPLKLAG 208 Query: 237 PELSSADILYVLRKDDADSKTLADAIDGAIKELKADGTLAKLSTEWLGADVTADE 291 + + + KDDA K L ++ A+ EL+ DGTL KLS ++ D+T ++ Sbjct: 209 DPIVYEQVAFPFAKDDAHDK-LRKKVNKALDELRKDGTLKKLSEKYFNEDITVEQ 262 >CAC3325 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Length = 269 Score = 108 bits (271), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 78/236 (33%), Positives = 127/236 (53%), Gaps = 17/236 (7%) Query: 58 KIVVGTGTGFPQVCFIDENGKLTGFDVELLKDIDSRLPQYEFELQTMDFSNLLLSLDTKK 117 K+ +GT + F D G LTGFDV++ K++ R+ + E + + LD + Sbjct: 45 KLRIGTEGTYAPFTFHDSKGNLTGFDVDIAKEVSKRIG-VKPEFVETKWDGMFAGLDAGR 103 Query: 118 IDLVAHVMEKNPEREQKYLFNTEPYAHWRNRIVVAKDNNSIKTLDDLKGKKALVGATSAQ 177 D+V + + P+R+ KY F+T PY R ++V KDNN+IK+ DLKGKK+ TS Sbjct: 104 FDVVLNEVAIKPDRKVKYDFST-PYITSRAVLIVKKDNNTIKSFSDLKGKKSAQSLTSNL 162 Query: 178 AQILENYNKEHDNAIKIVYQNGAANDTVSQISSGRVDATLAADFVLPVID-----PQAKL 232 I +N N +++ +G N+ V ++S RVDAT+ L +D P A + Sbjct: 163 GNIAKN------NGAELIQVDG-FNEAVDLLTSNRVDATINDS--LSYLDLKKQKPDAPI 213 Query: 233 KASGPELSSADILYVLRKDDADSKTLADAIDGAIKELKADGTLAKLSTEWLGADVT 288 K S ++A + K +++K L A++ A+K++K+DGT K+S +W G DV+ Sbjct: 214 K-SVANYNNASESAAMFKKGSNNKELIAAVNKALKDMKSDGTYLKISKKWFGTDVS 268 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.311 0.128 0.355 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 19,422,459 Number of extensions: 765496 Number of successful extensions: 1760 Number of sequences better than 1.0e-05: 106 Number of HSP's gapped: 1641 Number of HSP's successfully gapped: 107 Length of query: 293 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 187 Effective length of database: 26,153,027 Effective search space: 4890616049 Effective search space used: 4890616049 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 115 (48.9 bits)