BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0470.0036.p (260 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_ytmL [E] COG0765 ABC-type amino acid transport system, permea... 199 4e-51 lin2442 [E] COG0765 ABC-type amino acid transport system, permea... 198 9e-51 L163056 [E] COG0765 ABC-type amino acid transport system, permea... 170 2e-42 VC0009 [E] COG0765 ABC-type amino acid transport system, permeas... 164 2e-40 CAC0878 [E] COG0765 ABC-type amino acid transport system, permea... 148 6e-36 >BS_ytmL [E] COG0765 ABC-type amino acid transport system, permease component Length = 239 Score = 199 bits (506), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 95/201 (47%), Positives = 142/201 (70%) Query: 27 IVGFSLLAGIVVGFLVALPRLYKVPVLKTFAEIYISFFRGTPILIQLFLFYYGLPEILKL 86 I+ SLL G V+G +ALPR+Y +P++ A++YISFFRGTPI++QLF+ +YG+P + L Sbjct: 27 ILTLSLLFGFVLGLFLALPRIYNIPIVNQLAKVYISFFRGTPIMVQLFIVFYGIPALTGL 86 Query: 87 VHVDVTRTPVLFFVILTYGLHTGAFMSEMIRASVTAVDRGQVEAAYAAGMTSFQAFSRIV 146 + +D ++ + + TY L A +E+IRA V +VD+GQ EAAY+ G++ QAF RIV Sbjct: 87 IGIDTSKMDPFYAAVATYALSNAAAAAEIIRAGVGSVDKGQTEAAYSIGLSGSQAFRRIV 146 Query: 147 LPQALGIAVPVFSNLVIALLKDTSLAFTLGVMEMTGKAQTLGSISQHFIETYIALALIYL 206 LPQAL A P N+VI+ LKDTSLAF++GVM+M+G+ QTL + S H +E YIAL+++Y Sbjct: 147 LPQALVQAFPNMGNMVISSLKDTSLAFSIGVMDMSGRGQTLITSSNHSLEVYIALSIVYY 206 Query: 207 VISFTLEKLLLVAERRLLRHE 227 ++ E VAE+R+ +++ Sbjct: 207 AVAVLFEWFFRVAEKRIKKNQ 227 >lin2442 [E] COG0765 ABC-type amino acid transport system, permease component Length = 238 Score = 198 bits (503), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 95/201 (47%), Positives = 143/201 (71%) Query: 27 IVGFSLLAGIVVGFLVALPRLYKVPVLKTFAEIYISFFRGTPILIQLFLFYYGLPEILKL 86 I+ SL+ G ++G +++LPR+Y++PVL FA +YISFFRGTPI++QLF+ +YG+P + + Sbjct: 27 ILALSLIFGFILGVILSLPRIYQIPVLNQFARVYISFFRGTPIMVQLFIVFYGIPALSGV 86 Query: 87 VHVDVTRTPVLFFVILTYGLHTGAFMSEMIRASVTAVDRGQVEAAYAAGMTSFQAFSRIV 146 +D+++ L+ I TY L + A ++E+IRA V +VD GQ EAAY+ G+ Q F RI+ Sbjct: 87 FGIDLSQMDPLYAAIATYALSSAATIAEVIRAGVNSVDAGQAEAAYSVGLNGRQTFLRII 146 Query: 147 LPQALGIAVPVFSNLVIALLKDTSLAFTLGVMEMTGKAQTLGSISQHFIETYIALALIYL 206 LPQAL A+P F NLVI LKDTSLAF++GVM+M+G+ QTL ++S H +E YI+L++IY Sbjct: 147 LPQALYQALPNFGNLVIGYLKDTSLAFSIGVMDMSGRGQTLITLSNHALEVYISLSIIYY 206 Query: 207 VISFTLEKLLLVAERRLLRHE 227 + + LE E+R+ + Sbjct: 207 ITAVLLEYSFKWIEKRVKKEN 227 >L163056 [E] COG0765 ABC-type amino acid transport system, permease component Length = 295 Score = 170 bits (430), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 89/204 (43%), Positives = 128/204 (62%), Gaps = 7/204 (3%) Query: 46 RLYKVPVLKTFAEIYISFFRGTPILIQLFLFYYGLPEILKLVHVD------VTRTPVLFF 99 R+ K+P+L +++SF RGTPIL+QL+L Y G+P ILK ++++ V P + F Sbjct: 87 RINKIPILNQLRALFVSFIRGTPILVQLYLSYTGIPLILKAINMNYGTNFNVNTIPAMLF 146 Query: 100 VILTYGLHTGAFMSEMIRASVTAVDRGQVEAAYAAGMTSFQAFSRIVLPQALGIAVPVFS 159 VI+ + L+ GA+ SE IRA++ +VD+GQ+EAA + GMT+FQ F R+ LP+A +A Sbjct: 147 VIVAFALNEGAYNSETIRAAIQSVDKGQIEAAKSLGMTNFQVFMRVTLPEAATVATAPLG 206 Query: 160 NLVIALLKDTSLAFTLGVMEMTGKAQTLGSISQHFIETYIALALIYLVISFTLEKLLLVA 219 N +I LLK TSLAF GV+EMT +AQ +G + ETY+ALAL+Y I E L+ Sbjct: 207 NALIGLLKSTSLAFVAGVVEMTARAQIIGGSTFRLFETYLALALVYWPICIIFELLIRGL 266 Query: 220 ERRL-LRHEVPGSPERKTFSLQKH 242 ER+L +R R SL K+ Sbjct: 267 ERKLDVRMPNDKRKNRAQISLSKN 290 >VC0009 [E] COG0765 ABC-type amino acid transport system, permease component Length = 223 Score = 164 bits (414), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 91/220 (41%), Positives = 132/220 (60%), Gaps = 6/220 (2%) Query: 5 FDISYVFXXXXXXXXXXXXXXXIVGFSLLAGIVVGFLVALPRLYKVPVLKTFAEIYISFF 64 FD Y+ + + L+ +++ +A R++KVPVL +++YISFF Sbjct: 3 FDFHYMLELLPILLKYLGTTLEMASWGLVFALILALFLANIRVFKVPVLDPLSQLYISFF 62 Query: 65 RGTPILIQLFLFYYGLPEILKL-VHVDVTRTPVLFFVILTYGLHTGAFMSEMIRASVTAV 123 RGTP+L+QLFL YYGLP++ L V +D V+ LH A+M+E IRA++ + Sbjct: 63 RGTPLLVQLFLLYYGLPQVFPLLVGLDAFSAAVI-----GLTLHFAAYMAESIRAAIIGI 117 Query: 124 DRGQVEAAYAAGMTSFQAFSRIVLPQALGIAVPVFSNLVIALLKDTSLAFTLGVMEMTGK 183 DR Q+EA+ + GMT+ QA RI+LPQA +A+P N I ++K TSLAFTLGV E+ K Sbjct: 118 DRSQMEASLSVGMTTSQAMRRIILPQATRVALPSLMNYFIDMIKSTSLAFTLGVAEIMAK 177 Query: 184 AQTLGSISQHFIETYIALALIYLVISFTLEKLLLVAERRL 223 AQ S S F E ++A+ALIY V+ L +L AE++L Sbjct: 178 AQMEASSSFRFFEAFLAVALIYWVVVLVLTRLQSWAEQKL 217 >CAC0878 [E] COG0765 ABC-type amino acid transport system, permease component Length = 221 Score = 148 bits (374), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 82/195 (42%), Positives = 128/195 (65%), Gaps = 4/195 (2%) Query: 31 SLLAGIVVGFLVALPRLYKVPVLKTFAEIYISFFRGTPILIQLFLFYYGLPEILKLVHVD 90 S + G+V+ ++A ++ K+ L +YISFFRGTP+L+QLF+FYYGLP+++K + Sbjct: 29 STIIGLVIATILAPIKMLKIKGLSQVIGVYISFFRGTPLLVQLFVFYYGLPQLIKPLK-- 86 Query: 91 VTRTPVLFFVILTYGLHTGAFMSEMIRASVTAVDRGQVEAAYAAGMTSFQAFSRIVLPQA 150 TP L +IL L A+M+E+IR ++ +V++GQ+EAA + GMT FQAF+RI+ PQA Sbjct: 87 -NVTP-LEAMILGLSLCGSAYMAEIIRGAIESVEKGQMEAALSVGMTKFQAFTRIIYPQA 144 Query: 151 LGIAVPVFSNLVIALLKDTSLAFTLGVMEMTGKAQTLGSISQHFIETYIALALIYLVISF 210 + +A+P N + LLK +SLAF LG+ E+ +AQ + S +E+Y++LA+IY V Sbjct: 145 IRVAIPGIGNQFVDLLKSSSLAFVLGLTEILARAQMNAASSFKVMESYLSLAIIYWVTVE 204 Query: 211 TLEKLLLVAERRLLR 225 L + E+R+ R Sbjct: 205 IFNFLQRIIEKRISR 219 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.329 0.144 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,281,475 Number of extensions: 646861 Number of successful extensions: 2389 Number of sequences better than 1.0e-05: 201 Number of HSP's gapped: 2178 Number of HSP's successfully gapped: 201 Length of query: 260 Length of database: 38,378,431 Length adjustment: 104 Effective length of query: 156 Effective length of database: 26,383,695 Effective search space: 4115856420 Effective search space used: 4115856420 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 115 (48.9 bits)