BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0470.0034.p
         (71 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

lin2441 [E] COG0765 ABC-type amino acid transport system, permea...    63   1e-10
SPy1658 [E] COG0765 ABC-type amino acid transport system, permea...    60   9e-10
BS_ytmM [E] COG0765 ABC-type amino acid transport system, permea...    58   3e-09
VC0009 [E] COG0765 ABC-type amino acid transport system, permeas...    58   3e-09
L163056 [E] COG0765 ABC-type amino acid transport system, permea...    54   8e-08

>lin2441 [E] COG0765 ABC-type amino acid transport system, permease
           component
          Length = 235

 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 44/69 (63%)

Query: 2   IGMLHGSTLAFTVSVVDINAQAQIVASTNWKFFEAYLAAALIFWGLTFLIERATALIEKR 61
           IG LH +++A  V+V +I   A IVAS N+ F EA++ AALI+W LT LIE    ++EK 
Sbjct: 167 IGFLHTTSIAAIVAVPEITGMATIVASDNYAFLEAFIGAALIYWFLTILIEAINYILEKN 226

Query: 62  INLYNRGGV 70
           I  Y  G V
Sbjct: 227 IAKYQGGTV 235


>SPy1658 [E] COG0765 ABC-type amino acid transport system, permease
           component
          Length = 267

 Score = 60.1 bits (144), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 46/62 (74%)

Query: 1   VIGMLHGSTLAFTVSVVDINAQAQIVASTNWKFFEAYLAAALIFWGLTFLIERATALIEK 60
           +IG+  G++LAF   +V++ AQAQI+  +++++FE Y++ AL++W ++ L+E+   LIE 
Sbjct: 189 LIGLTKGTSLAFNAGIVEMFAQAQILGGSDYRYFERYISVALVYWSISILMEQVGRLIEN 248

Query: 61  RI 62
           ++
Sbjct: 249 KM 250


>BS_ytmM [E] COG0765 ABC-type amino acid transport system, permease
           component
          Length = 235

 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 44/67 (65%)

Query: 2   IGMLHGSTLAFTVSVVDINAQAQIVASTNWKFFEAYLAAALIFWGLTFLIERATALIEKR 61
           IG LH +++A  V+V +I   A IVAS N+ F EA++ AA+I+W LT ++E A  ++E++
Sbjct: 167 IGFLHTTSIAAIVAVPEITGTATIVASDNYAFLEAFIGAAIIYWVLTLILESANGVLERK 226

Query: 62  INLYNRG 68
              +  G
Sbjct: 227 AARFQGG 233


>VC0009 [E] COG0765 ABC-type amino acid transport system, permease
           component
          Length = 223

 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 46/62 (74%)

Query: 2   IGMLHGSTLAFTVSVVDINAQAQIVASTNWKFFEAYLAAALIFWGLTFLIERATALIEKR 61
           I M+  ++LAFT+ V +I A+AQ+ AS++++FFEA+LA ALI+W +  ++ R  +  E++
Sbjct: 157 IDMIKSTSLAFTLGVAEIMAKAQMEASSSFRFFEAFLAVALIYWVVVLVLTRLQSWAEQK 216

Query: 62  IN 63
           +N
Sbjct: 217 LN 218


>L163056 [E] COG0765 ABC-type amino acid transport system, permease
           component
          Length = 295

 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 43/64 (67%)

Query: 1   VIGMLHGSTLAFTVSVVDINAQAQIVASTNWKFFEAYLAAALIFWGLTFLIERATALIEK 60
           +IG+L  ++LAF   VV++ A+AQI+  + ++ FE YLA AL++W +  + E     +E+
Sbjct: 209 LIGLLKSTSLAFVAGVVEMTARAQIIGGSTFRLFETYLALALVYWPICIIFELLIRGLER 268

Query: 61  RINL 64
           ++++
Sbjct: 269 KLDV 272


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.328    0.139    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 4,633,901
Number of extensions: 117628
Number of successful extensions: 442
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 443
Number of HSP's successfully gapped: 9
Length of query: 71
Length of database: 38,378,431
Length adjustment: 42
Effective length of query: 29
Effective length of database: 33,534,403
Effective search space: 972497687
Effective search space used: 972497687
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 109 (46.6 bits)