BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0470.0024.p
         (209 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

yfbR [R] COG1896 Predicted hydrolases of HD superfamily                57   2e-08

>yfbR [R] COG1896 Predicted hydrolases of HD superfamily
          Length = 199

 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 72/151 (47%), Gaps = 2/151 (1%)

Query: 6   YFRSLNELERIIRCPGKFKFEEHSVAAHSWKVVQYAKTLADIEEQN-GAVIDWKKLYEIT 64
           +F  L+ L+ I R P        +V+ HS +V   A  LA I+ +  G  ++ +++  + 
Sbjct: 6   FFAHLSRLKLINRWPLMRNVRTENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLA 65

Query: 65  SSHDYGEIFIGDIKTPVKHSSLQLRSLIQQVEEGMIDNFIKEHIPEEFKSIFYHQLREGK 124
             HD  E+  GD+ TPVK+ + Q+    + +E+      + + +PEE + IF   + E  
Sbjct: 66  MYHDASEVLTGDLPTPVKYFNSQIAQEYKAIEKIAQQKLV-DMVPEELRDIFAPLIDEHA 124

Query: 125 DESLEGLILEVADKMDQVYEAFAELQRGNTE 155
               E  +++ AD +    +   EL  GN E
Sbjct: 125 YSDEEKSLVKQADALCAYLKCLEELAAGNNE 155


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.319    0.136    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 14,692,530
Number of extensions: 568302
Number of successful extensions: 1838
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1838
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 38,378,431
Length adjustment: 102
Effective length of query: 107
Effective length of database: 26,614,363
Effective search space: 2847736841
Effective search space used: 2847736841
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)