BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0470.0019.p (282 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC2818 [K] COG2207 AraC-type DNA-binding domain-containing prot... 138 1e-32 CAC1333 [K] COG2207 AraC-type DNA-binding domain-containing prot... 137 1e-32 CAC2608 [K] COG2207 AraC-type DNA-binding domain-containing prot... 127 2e-29 VC1825 [K] COG2207 AraC-type DNA-binding domain-containing proteins 70 3e-12 BH3679 [T] COG4753 Response regulator containing CheY-like recei... 68 2e-11 >CAC2818 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 279 Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 78/254 (30%), Positives = 136/254 (53%), Gaps = 3/254 (1%) Query: 28 SPTKDFHIHDHYEIFLFLGGQVNCFVEQYSYPLSPGNVLLFNNQEIHKIINLSPEPYERI 87 S + +FH HD +I +F+ G+V +E +Y L P ++LL NN ++HK I S + YERI Sbjct: 22 SQSFEFHYHDFNKIIIFISGKVTYLIEGKAYELKPWDILLVNNHDVHKPIIDSSKVYERI 81 Query: 88 TIHFKAPLVYPFCTADTNLLACFQNRQTGEHNLSQMDEAQLEAFTGLAFRLIDILKHPQY 147 I + + D +L CF+ + NL ++ + + L LK ++ Sbjct: 82 IIWANSDFIKKHNYEDCDLSNCFKLARERSFNLVRLKTELQDNMKFIINSLEQSLKSKEF 141 Query: 148 GGDVLALTYLIQLLVQVNDLYSRS--FSAVPSL-ISTLIQSAMAYIDHHLHLPLSLEGIA 204 G + + + IQL++ +N ++ + + +L I+ + YI+ +L LS E +A Sbjct: 142 GSKLFSNSLFIQLIIYLNRVHLENMYLTGKETLRYDKQIEKILKYINANLKGELSTEALA 201 Query: 205 EELSVDKYYLSHLFKQQTGGTLYRYVLLKKITLAKQLLTAGNSVSDTCYLSGFNDYANFI 264 E + KYYL H FK++TG TL+ YVL K++ L+K ++ G++++ GF DY++F Sbjct: 202 REFYMSKYYLMHKFKKETGYTLHNYVLQKRLLLSKDMIKKGDAITKAYMQCGFKDYSSFF 261 Query: 265 RTFKNFTGHTPGQY 278 R FK G +P ++ Sbjct: 262 RAFKKMFGRSPREF 275 >CAC1333 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 286 Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 80/251 (31%), Positives = 139/251 (55%), Gaps = 11/251 (4%) Query: 34 HIHDHYEIFLFLGGQVNCFVEQYSYPLSPGNVLLFNNQEIHK-IINLSPEPYERITIHFK 92 H HD YE + F+ G V +E SY L+ GN++L N++E+H+ IIN E YERI + Sbjct: 35 HHHDFYEFYFFISGDVTYLIEGKSYCLNSGNIILINSRELHQAIINSQRENYERIVLWIS 94 Query: 93 APLVYPFCTADTNLLACFQNRQTGEHNLSQMDEAQLEAFTGLAFRLIDILKHPQYGGDVL 152 + + + +L CF++ + + N+ D Q + + ++I + + G ++L Sbjct: 95 RVFLQKLSSNEIDLSLCFESNK--KKNVLIADFEQEKNIRAILNKIISLENYKAMGYELL 152 Query: 153 ALTYLIQLLVQVNDLYSRSFS-----AVPSLISTLIQSAMAYIDHHLHLPLSLEGIAEEL 207 Y+ +L+V ++Y+ FS +V + S LI + YI ++ ++++ IAE+ Sbjct: 153 YKAYITELMV---NIYNLEFSGDTQLSVDTKKSNLIDEIIEYITFNIEEDITIDKIAEQF 209 Query: 208 SVDKYYLSHLFKQQTGGTLYRYVLLKKITLAKQLLTAGNSVSDTCYLSGFNDYANFIRTF 267 + K++LS FK+ TG T++RY++ KK+ AK+L+ S++D GF DY+NF R F Sbjct: 210 YLSKFHLSREFKKYTGTTIHRYIIQKKLIQAKELILKDISITDVYKKCGFGDYSNFFRAF 269 Query: 268 KNFTGHTPGQY 278 KN TP Q+ Sbjct: 270 KNEYKITPKQF 280 >CAC2608 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 284 Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 71/253 (28%), Positives = 136/253 (53%), Gaps = 7/253 (2%) Query: 29 PTKDFHIHDHYEIFLFLGGQVNCFVEQYSYPLSPGNVLLFNNQEIHKIINLSPEPYERIT 88 T HIHD YEI+ + G+ ++ Y ++PGN+ N E H + ++ +ERI Sbjct: 30 ETMSIHIHDCYEIYYSISGENQFLIDNKLYYINPGNLFAVNEFESHYVSQVNNSTHERIV 89 Query: 89 IHFKAPLVYPFCTADTNLLACFQNRQTG-EHNLSQMDEAQLEAFTGLAFRLIDILKHPQY 147 I + CT+ TNL CF++R + H +S E Q + + + I+ + Sbjct: 90 ISIHPDFLKSLCTSKTNLTYCFKHRGSNFCHKVSLNKEQQ----SRFMYFINKIIGSHGF 145 Query: 148 GGDVLALTYLIQLLVQVNDLYSRSFSAVPSLI--STLIQSAMAYIDHHLHLPLSLEGIAE 205 G D++ I+L++ + L+ + ++ + S I+ + YI+ ++ ++++ +AE Sbjct: 146 GADMIEYASFIELMIFLTSLFINNGESLTPIYKYSNQIEEIIRYINDNVTNDITVKHLAE 205 Query: 206 ELSVDKYYLSHLFKQQTGGTLYRYVLLKKITLAKQLLTAGNSVSDTCYLSGFNDYANFIR 265 + + Y+ +FK TG T+ +Y+ ++I++AK LL+ G+S++D GFNDY+NF++ Sbjct: 206 HFFLSESYICRIFKLSTGTTINKYITARRISMAKALLSNGSSINDVYVKCGFNDYSNFLK 265 Query: 266 TFKNFTGHTPGQY 278 +FK G +P +Y Sbjct: 266 SFKKAVGISPKKY 278 >VC1825 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 279 Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/180 (28%), Positives = 82/180 (45%), Gaps = 16/180 (8%) Query: 110 FQNRQTGEHNLSQMDEAQLEAFTGLA----FRLIDILKHPQYGGDVLALTYLIQLLVQVN 165 F +++ GE N + + ++ +G A + L Y + L L+Q L+Q Sbjct: 103 FVSKRKGEANFYDIQKHSIQTRSGFAIDNILEALSSLARENYKKPMDEL--LLQALLQ-- 158 Query: 166 DLYSRSFSAVPS-----LISTLIQSAMAYIDHHLHLPLSLEGIAEELSVDKYYLSHLFKQ 220 Y+++ P+ + L Q YI + H P++ E IA S+ +LS LF+Q Sbjct: 159 --YTQTMLNAPTEQPQNRVQDLYQGICIYIQENFHRPITRESIASRFSISANHLSRLFRQ 216 Query: 221 QTGGTLYRYVLLKKITLAKQLLTAGN-SVSDTCYLSGFNDYANFIRTFKNFTGHTPGQYR 279 Q TL Y+ ++ AK +L N +++ GF D F R FKN TG TP YR Sbjct: 217 QGHMTLADYITWVRVDRAKFMLKKYNFKLNEVSLRCGFKDVNYFCRVFKNRTGRTPTDYR 276 >BH3679 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 257 Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 41/122 (33%), Positives = 62/122 (50%), Gaps = 4/122 (3%) Query: 163 QVNDLYSRSFSAVPS---LISTLIQSAMAYIDHHLHLPLSLEGIAEELSVDKYYLSHLFK 219 QV ++ A+ S I A+ YID HL + L+ +A+ + ++ YLS LFK Sbjct: 133 QVEKVWDEKIDAIEKERLSSSDSIHEALHYIDAHLDQKIGLKDVAKSVHLNPSYLSALFK 192 Query: 220 QQTGGTLYRYVLLKKITLAKQLLTAGNS-VSDTCYLSGFNDYANFIRTFKNFTGHTPGQY 278 ++T T Y+ K++ AK LL + + +SD G+ FI+ FK G TP QY Sbjct: 193 EKTNMTFSEYLTRKRLQHAKHLLVSTDRPISDIAEKCGYQTAKYFIKIFKEHEGMTPTQY 252 Query: 279 RK 280 RK Sbjct: 253 RK 254 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.322 0.139 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 21,485,295 Number of extensions: 920493 Number of successful extensions: 3706 Number of sequences better than 1.0e-05: 778 Number of HSP's gapped: 2267 Number of HSP's successfully gapped: 778 Length of query: 282 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 177 Effective length of database: 26,268,361 Effective search space: 4649499897 Effective search space used: 4649499897 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 115 (48.9 bits)