BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0470.0014.p (255 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value MA0107 [IQR] COG1028 Dehydrogenases with different specificities... 200 2e-51 NMA0107 [J] COG0257 Ribosomal protein L36 200 2e-51 idnO [IQR] COG1028 Dehydrogenases with different specificities (... 161 8e-40 STM0297 [L] COG2801 Transposase and inactivated derivatives 160 1e-39 TM0297 [IQR] COG1028 Dehydrogenases with different specificities... 160 1e-39 >MA0107 [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Length = 255 Score = 200 bits (509), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 98/255 (38%), Positives = 148/255 (58%) Query: 1 MNNLFDLSGKXXXXXXXXXXXXXELAKAFAAQGADVALLDLRPDKLITPAREIESAGRQT 60 M NLFDL+GK E A+A A QGA++A++ R +KL +EIE G Sbjct: 1 MKNLFDLTGKVAIVTGASSGLGVEFARALANQGANIAIIARREEKLKEVQKEIEKLGVTC 60 Query: 61 LSLGCDVIREDEIETAVQAILQHWGQIDILVNNAGVASAGSVEELEEREWDRVIDTNLKS 120 CDV++ ++I+ AV+ +++ +G+IDILVNNAG+ + ++ + W +IDTNL Sbjct: 61 RYYLCDVMKTEQIKNAVEQVVKDFGRIDILVNNAGLGLVDAADKTTDEMWHNMIDTNLNG 120 Query: 121 IFLMSKHVIKPMKERRYGRIINMASICGMTGSKSFPLHAYNASKGAVLSITRGMGASLAP 180 ++ ++ V K M +++GRIIN+ SI K P+ AY ++KG VL +T+ + A Sbjct: 121 VYFFAREVGKIMLRQKHGRIINIGSIHSTVSMKGLPVTAYCSTKGGVLMLTKSLATEWAK 180 Query: 181 YGITVNAIGPSLFRTEMTERALYQDSFLQLYNAQCPIGRPGNPEEINGAAIYFASDASSY 240 GITVNAIGP F M E + F ++ CP+GR G +++ +Y ASD S Y Sbjct: 181 EGITVNAIGPGYFALGMAEGVVADPEFAKIIEFMCPMGRAGQSGDLDTTVVYLASDESKY 240 Query: 241 TTGQTLYVDGGWTSV 255 TGQ + VDGGWT++ Sbjct: 241 ITGQIITVDGGWTAL 255 >NMA0107 [J] COG0257 Ribosomal protein L36 Length = 255 Score = 200 bits (509), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 98/255 (38%), Positives = 148/255 (58%) Query: 1 MNNLFDLSGKXXXXXXXXXXXXXELAKAFAAQGADVALLDLRPDKLITPAREIESAGRQT 60 M NLFDL+GK E A+A A QGA++A++ R +KL +EIE G Sbjct: 1 MKNLFDLTGKVAIVTGASSGLGVEFARALANQGANIAIIARREEKLKEVQKEIEKLGVTC 60 Query: 61 LSLGCDVIREDEIETAVQAILQHWGQIDILVNNAGVASAGSVEELEEREWDRVIDTNLKS 120 CDV++ ++I+ AV+ +++ +G+IDILVNNAG+ + ++ + W +IDTNL Sbjct: 61 RYYLCDVMKTEQIKNAVEQVVKDFGRIDILVNNAGLGLVDAADKTTDEMWHNMIDTNLNG 120 Query: 121 IFLMSKHVIKPMKERRYGRIINMASICGMTGSKSFPLHAYNASKGAVLSITRGMGASLAP 180 ++ ++ V K M +++GRIIN+ SI K P+ AY ++KG VL +T+ + A Sbjct: 121 VYFFAREVGKIMLRQKHGRIINIGSIHSTVSMKGLPVTAYCSTKGGVLMLTKSLATEWAK 180 Query: 181 YGITVNAIGPSLFRTEMTERALYQDSFLQLYNAQCPIGRPGNPEEINGAAIYFASDASSY 240 GITVNAIGP F M E + F ++ CP+GR G +++ +Y ASD S Y Sbjct: 181 EGITVNAIGPGYFALGMAEGVVADPEFAKIIEFMCPMGRAGQSGDLDTTVVYLASDESKY 240 Query: 241 TTGQTLYVDGGWTSV 255 TGQ + VDGGWT++ Sbjct: 241 ITGQIITVDGGWTAL 255 >idnO [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Length = 200 Score = 161 bits (408), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 0/251 (0%), Positives = 0/251 (0%), Gaps = 2/251 (0%) Query: 1 MNNLFDLSGKXXXXXXXXXXXXXELAKAFAAQGADVALLDLRPDKLITPAREIESAGRQT 60 M++ F + + I + Sbjct: 1 MSDKFGEGRDPYLYPGLDIMRNRLNIRQQQRLEQAAYEMTALRAATIELGPLVRGLPHLR 60 Query: 61 LSLGCDVIREDEIETAVQAILQHWGQIDILVNNAGVASAGSVEELEEREWDRVIDTNLKS 120 + ++ + + G ++ + E E V K Sbjct: 61 TIHRQLYQDIFDWAGQLREVDIYQGDTPFCHFAYIEKEGNALMQDLEEEGYLVGLEKAKF 120 Query: 121 IFLMSKHVIKPMKERRYGRIINMASICGMTGSKSFPLHAYNASKGAVLSITRGMGASLAP 180 + ++ + + + +A Y S + Sbjct: 121 VERLAHYYCEINVLHPFRVGSGLAQRIFFEQLAI--HAGYQLSWQGIEKEAWNQANQSGA 178 Query: 181 YGITVNAIGPSLFRTEMTERALYQDSFLQLYNAQCPIGRPGNPEEINGAAIYFASDASSY 240 Sbjct: 179 238 Query: 241 TTGQTLYVDGG 251 Sbjct: 239 249 >STM0297 [L] COG2801 Transposase and inactivated derivatives Length = 65 Score = 160 bits (406), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 0/218 (0%), Positives = 0/218 (0%), Gaps = 1/218 (0%) Query: 36 VALLDLRPDKLITPAREIESAGRQTLSLGCDVIREDEIETAVQAILQHWGQIDILVNNAG 95 Sbjct: 39 98 Query: 96 VASAGSVEELEEREWDRVIDTNLKSIFLMSKHVIKPMKERRYGRIINMASICGMTGSKSF 155 Sbjct: 99 158 Query: 156 PLHAYNASKGAVLSITRGMGASLAPYGITVNAIGPSLFRTEMTERALYQDSFLQLYNAQC 215 Sbjct: 159 - 217 Query: 216 PIGRPGNPEEINGAAIYFASDASSYTTGQTLYVDGGWT 253 Sbjct: 218 255 >TM0297 [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Length = 257 Score = 160 bits (406), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 87/218 (39%), Positives = 124/218 (56%), Gaps = 1/218 (0%) Query: 36 VALLDLRPDKLITPAREIESAGRQTLSLGCDVIREDEIETAVQAILQHWGQIDILVNNAG 95 V ++D+ + EI+ G + DV +E++ AV+ L WG++DI VNNAG Sbjct: 39 VLIMDINEETARRTVEEIKEKGGEADFYVGDVTKEEDCFGAVKKALDRWGKLDIGVNNAG 98 Query: 96 VASAGSVEELEEREWDRVIDTNLKSIFLMSKHVIKPMKERRYGRIINMASICGMTGSKSF 155 + E +W +VID NL +FL +K MKER+YG+IIN+AS+ G +K Sbjct: 99 IGDWCEAENYPVEKWKKVIDVNLVGVFLSAKAEFHAMKERKYGKIINIASMSGHIVNKPQ 158 Query: 156 PLHAYNASKGAVLSITRGMGASLAPYGITVNAIGPSLFRTEMTERALYQDSFLQLYNAQC 215 AYNASK V+ +TR + A APYGI VN+I P RT + E +D + L+ Sbjct: 159 KQTAYNASKAGVIHLTRSLAAEWAPYGIRVNSISPGYIRTPLIESPNVKD-LVPLWLDMI 217 Query: 216 PIGRPGNPEEINGAAIYFASDASSYTTGQTLYVDGGWT 253 P+GR G +++ GAAI+ AS AS Y TG L +DGG+T Sbjct: 218 PLGRLGEVDDLIGAAIFLASPASDYMTGHDLVIDGGYT 255 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.317 0.133 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,088,035 Number of extensions: 671008 Number of successful extensions: 4987 Number of sequences better than 1.0e-05: 324 Number of HSP's gapped: 4487 Number of HSP's successfully gapped: 324 Length of query: 255 Length of database: 38,378,431 Length adjustment: 104 Effective length of query: 151 Effective length of database: 26,383,695 Effective search space: 3983937945 Effective search space used: 3983937945 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 114 (48.5 bits)