BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0470.0009.p (319 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0484 [G] COG4209 ABC-type polysaccharide transport system, per... 254 2e-67 BH1911 [G] COG4209 ABC-type polysaccharide transport system, per... 251 8e-67 BS_lplB [G] COG4209 ABC-type polysaccharide transport system, pe... 251 1e-66 BH1065 [G] COG4209 ABC-type polysaccharide transport system, per... 231 2e-60 BH2112 [G] COG4209 ABC-type polysaccharide transport system, per... 229 3e-60 >BH0484 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 325 Score = 254 bits (648), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 126/273 (46%), Positives = 192/273 (70%), Gaps = 1/273 (0%) Query: 48 KYAPIYGLVMAFQDYNIFEGIKGSEWVGLDVFRFIFEQDSFYRALKNTLVLNVLDLIAGF 107 KY P++GL++AFQDY F G+ GSEWVG F +F + +F++ L+NTLVL + +LI F Sbjct: 53 KYVPMWGLIIAFQDYQPFLGVTGSEWVGFKHFERLFTEPTFFQLLRNTLVLFLYNLIFFF 112 Query: 108 PAPILLAILLNEVRQAAFKKVTQTVLYLPHFLSWVIIGGMVYLMFS-NSGMINNFLAGFG 166 P PI+LA+LLNE+R FK+ QT++Y+PHF+SWVI+ + Y++F+ + G+IN + Sbjct: 113 PVPIILAVLLNEIRLMVFKRFVQTMIYIPHFMSWVIVVSLTYVLFTTDGGVINEIIYSIT 172 Query: 167 LDKIEFLSQKTPWLITYISVGVWQNIGWGTIIYLAAITGINKELYEASDIDGCSRLRQMW 226 + FL + + YI +W+ GW TIIY AAI I+ LYEA+ +DG +R RQ+W Sbjct: 173 GKNVNFLMSEDWFRPLYILQVIWREAGWATIIYFAAIAAIDPSLYEAAKMDGANRFRQIW 232 Query: 227 HITLPGIKSTINILLILQIGRMVSIGFDRPFVMGNSLVNEYSDVISTFVYRVGISSGDFS 286 HITLP I+S I +LLIL+IG ++ +GF+ F+M N++ E +++ T+VY G+ G FS Sbjct: 233 HITLPAIRSVIVVLLILKIGDILELGFEHVFLMLNAMNREVAEIFDTYVYTAGLKEGQFS 292 Query: 287 QATAVGLFQSVVGLVLLLSANFIAKKLGEDGIW 319 +TAVG F+S+VGL++++ AN++AKK GE+G++ Sbjct: 293 YSTAVGFFKSIVGLIMVMLANWLAKKFGEEGVY 325 >BH1911 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 319 Score = 251 bits (642), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 127/319 (39%), Positives = 197/319 (61%), Gaps = 5/319 (1%) Query: 4 MKAVLDNSREYVATKKKNHFLHNLKRDSXXXXXXXXXXXXXXXXKYAPIYGLVMAFQDYN 63 M+ V + + + +++ L LK+ Y P++G MAFQ++ Sbjct: 1 METVKEKAHSKIRVQRRKKILTTLKQQKYLYLMSLPFVAWVLVFNYFPLWGWTMAFQNFR 60 Query: 64 IFEGIKGSEWVGLDVFRFIFEQDSFYRALKNTLVLNVLDLIAGFPAPILLAILLNEVRQA 123 EWVGL F +F+ + FY L+NTL ++++ LI GF PIL A+LLNEVR Sbjct: 61 PGLSFFEQEWVGLQHFIELFQDNRFYLVLRNTLAMSIMGLIVGFTMPILFAVLLNEVRHM 120 Query: 124 AFKKVTQTVLYLPHFLSWVIIGGMVYLMFS-NSGMINNFLAGFGL--DKIEFLSQ-KTPW 179 FK+ QTV YLPHF+SWV++ G+V M S + G++N L FG ++F+++ + W Sbjct: 121 VFKRTVQTVSYLPHFVSWVVVAGIVTKMLSIDGGIVNQLLMAFGFVDQPVQFMAKGEWFW 180 Query: 180 LITYISVGVWQNIGWGTIIYLAAITGINKELYEASDIDGCSRLRQMWHITLPGIKSTINI 239 +I +S +W+ +GW +II+LAA+ GI+ +LYEA+ +DG SR RQ+WHITLPGI+ TI + Sbjct: 181 VIVTLS-DLWKEMGWNSIIFLAAMAGIDPQLYEAAKVDGASRWRQIWHITLPGIRPTILV 239 Query: 240 LLILQIGRMVSIGFDRPFVMGNSLVNEYSDVISTFVYRVGISSGDFSQATAVGLFQSVVG 299 +LIL IG +++IGF++ F++GN LV +YS+V+ + G+ G +S TA+G+F SVV Sbjct: 240 ILILSIGHLMAIGFEKQFLLGNPLVVDYSEVLDLYALNYGLGLGRYSYGTAIGIFNSVVC 299 Query: 300 LVLLLSANFIAKKLGEDGI 318 ++LL AN I K+ + Sbjct: 300 IILLFLANGIFKRFTNQSV 318 >BS_lplB [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 318 Score = 251 bits (640), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 133/317 (41%), Positives = 207/317 (65%), Gaps = 2/317 (0%) Query: 4 MKAVLDNSREYVATKKKN-HFLHNLKRDSXXXXXXXXXXXXXXXXKYAPIYGLVMAFQDY 62 M+ V V T K ++ LKRD KY P++G+++AF+DY Sbjct: 1 METVPKKRDAPVLTAGKGISWMAALKRDKWLYLLLIPGLLYFLIFKYLPMWGVLIAFKDY 60 Query: 63 NIFEGIKGSEWVGLDVFRFIFEQDSFYRALKNTLVLNVLDLIAGFPAPILLAILLNEVRQ 122 + + G SEWVG D F+ F F+R L+NTL+L LDL+ FPAP++LA+LLNEVR+ Sbjct: 61 SPYLGFWKSEWVGFDYFKDFFMNPDFFRLLRNTLMLASLDLLFAFPAPLILALLLNEVRK 120 Query: 123 AAFKKVTQTVLYLPHFLSWVIIGGMVYLMFS-NSGMINNFLAGFGLDKIEFLSQKTPWLI 181 A +K+ QT +Y+PHF+SW I+ + ++ F+ ++G+IN + ++I FLS + Sbjct: 121 AVYKRCIQTFIYVPHFVSWTIVVSITFVFFTVDTGVINKLIMSLTGEQISFLSDADWFRP 180 Query: 182 TYISVGVWQNIGWGTIIYLAAITGINKELYEASDIDGCSRLRQMWHITLPGIKSTINILL 241 + +W+ GWGTI++LAA+ +++E YEA+ +DG R R+MWHITLP I+STI +LL Sbjct: 181 MIVMQSIWKETGWGTILFLAALATVDQEQYEAAIMDGAGRFRRMWHITLPAIRSTIIVLL 240 Query: 242 ILQIGRMVSIGFDRPFVMGNSLVNEYSDVISTFVYRVGISSGDFSQATAVGLFQSVVGLV 301 IL+IG +++GF++ ++M NSL +D+ T+VY +GI+ G +S +TAVGLF+SVVG++ Sbjct: 241 ILRIGSFLNLGFEQVYLMTNSLNRSVADIFDTYVYMMGITQGAYSYSTAVGLFKSVVGII 300 Query: 302 LLLSANFIAKKLGEDGI 318 L+ AN+IAKK ++G+ Sbjct: 301 LIFGANYIAKKFDQEGL 317 >BH1065 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 317 Score = 231 bits (588), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 126/309 (40%), Positives = 190/309 (61%), Gaps = 3/309 (0%) Query: 5 KAVLDNSREYVATKKKNHFLHNLKRDSXXXXXXXXXXXXXXXXKYAPIYGLVMAFQDYNI 64 +AV N++ KK + N +R +Y P++G+VMAFQDY Sbjct: 4 QAVTSNAKTVERKLKKQKW--NFRRTWQLHVLLIPALVLALIFQYGPMFGIVMAFQDYKP 61 Query: 65 FEGIKGSEWVGLDVFRFIFEQDSFYRALKNTLVLNVLDLIAGFPAPILLAILLNEVRQAA 124 + G GSEWVGL F +FE D + + NTLV++VL +I G PI++A+LLNE+ Q Sbjct: 62 WLGFTGSEWVGLQHFITMFEYDYAKQVIWNTLVISVLKMIFGLIVPIIVALLLNEMYQMV 121 Query: 125 FKKVTQTVLYLPHFLSWVIIGGMVYLMFS-NSGMINNFLAGFGLDKIEFLSQKTPWLITY 183 K+ QT++YLP+FLSWVI+GG++ + S + G++N L FG+D I FL + T Sbjct: 122 VKRTVQTIIYLPYFLSWVILGGILIDVLSPDGGIVNQALGLFGIDPIFFLGSNDWFRTTV 181 Query: 184 ISVGVWQNIGWGTIIYLAAITGINKELYEASDIDGCSRLRQMWHITLPGIKSTINILLIL 243 + +W+ G+ TI++LAAIT +N LYEA+ +DG +R +Q HITLP + I ++ L Sbjct: 182 VISDLWKETGFNTIVFLAAITAVNPNLYEAAVVDGANRWKQTLHITLPAMLPIIIVVATL 241 Query: 244 QIGRMVSIGFDRPFVMGNSLVNEYSDVISTFVYRVGISSGDFSQATAVGLFQSVVGLVLL 303 +G +++ GFD+ F + N LV + D+I T+VYRV + +GDFS TAVGLF+S++ LVL+ Sbjct: 242 SLGNILNAGFDQIFNLYNPLVYQTGDIIDTYVYRVSLVNGDFSYGTAVGLFKSLISLVLI 301 Query: 304 LSANFIAKK 312 + +A K Sbjct: 302 IIGYRLAYK 310 >BH2112 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 337 Score = 229 bits (585), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 121/280 (43%), Positives = 179/280 (63%), Gaps = 21/280 (7%) Query: 48 KYAPIYGLVMAFQDYNIFEGIKGSEWVGLDVFRFIFEQDSFYRALKNTLVLNVLDLIAGF 107 +Y P+YG +AFQD+ I +W G F F+F F+ L+NTL +++++L+ GF Sbjct: 63 RYVPLYGWSIAFQDFRPARPIFDQDWAGFKHFTFLFTDPRFFEVLRNTLAMSLINLVLGF 122 Query: 108 PAPILLAILLNEVRQAAFKKVTQTVLYLPHFLSWVIIGGMVYLMFS-NSGMINNFLAGFG 166 I LAILLNE+R FK+V QT+ Y+PHFLSWV+ G+V S +G+IN L G Sbjct: 123 VTAIGLAILLNELRNLTFKRVVQTISYMPHFLSWVVAAGLVSAALSIENGIINIVLMKLG 182 Query: 167 LDKIEFLSQKTPWLITYISVG-----------VWQNIGWGTIIYLAAITGINKELYEASD 215 + +S+ WL VG VW+N+GW TIIYLAAIT I+ E YEA++ Sbjct: 183 M-----ISEPIMWL----GVGEYFWGIIGASDVWKNVGWNTIIYLAAITMIDTEQYEAAE 233 Query: 216 IDGCSRLRQMWHITLPGIKSTINILLILQIGRMVSIGFDRPFVMGNSLVNEYSDVISTFV 275 IDG +RL+++W+ITLPG++ I ILLI+ +G ++ GF+ +++ N + ++++ + FV Sbjct: 234 IDGATRLQRIWYITLPGMRPVIVILLIMNLGYILESGFEAQYLLMNPMNMDFAENLDIFV 293 Query: 276 YRVGISSGDFSQATAVGLFQSVVGLVLLLSANFIAKKLGE 315 R GI+ G+FS ATA G+F++VV + L SAN IAK+LGE Sbjct: 294 LRYGINMGNFSLATAAGIFKTVVSFIFLFSANHIAKRLGE 333 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.326 0.142 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 21,494,597 Number of extensions: 837454 Number of successful extensions: 2538 Number of sequences better than 1.0e-05: 150 Number of HSP's gapped: 2441 Number of HSP's successfully gapped: 150 Length of query: 319 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 213 Effective length of database: 26,153,027 Effective search space: 5570594751 Effective search space used: 5570594751 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 116 (49.3 bits)