BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0470.0008.p (295 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0481 [G] COG0395 ABC-type sugar transport system, permease com... 246 3e-65 BS_ytcP [G] COG0395 ABC-type sugar transport system, permease co... 244 1e-64 BS_lplC [G] COG0395 ABC-type sugar transport system, permease co... 233 4e-61 SP1797 [G] COG0395 ABC-type sugar transport system, permease com... 205 7e-53 BH1066 [G] COG0395 ABC-type sugar transport system, permease com... 195 6e-50 >BH0481 [G] COG0395 ABC-type sugar transport system, permease component Length = 293 Score = 246 bits (628), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 119/274 (43%), Positives = 192/274 (70%), Gaps = 8/274 (2%) Query: 26 SFTCIVPFLYMIALSFSSNEAIIAQKVGLWPVEFTAETYKTILSDVDMLYTLGYSIVLTI 85 S C +PF++++A SF+S E ++ ++ L+P F+ + Y+ I S + +L SI++T+ Sbjct: 24 SMICFLPFVHIVAGSFASVEEVLQKRFILFPTTFSLDAYRYIFSTDIIFRSLIISILVTV 83 Query: 86 FYTGVCMFLTICAAYPLTKKRLMGRGFILTALVFTMYFSGGLIPSYILVKNLGMMNTVWS 145 TG MFLT AY L++K L GR ++ +VFTM FSGG+IP++++V++LG+++T W+ Sbjct: 84 VGTGFSMFLTSLMAYGLSRKDLDGRRVLMFLVVFTMLFSGGMIPTFLVVRSLGLLDTYWA 143 Query: 146 LVLPGAMSVFNMIILKTFFTNLPESLEESAAIDGCSDLGILIKIVLPLSLPSIATLSLFY 205 L++P A++ FN+IILK FF N+PESLEESA IDGC+D+GI +IV PLS+P+IAT+SLFY Sbjct: 144 LIIPTAINAFNLIILKNFFQNIPESLEESAKIDGCNDVGIFFRIVFPLSMPAIATISLFY 203 Query: 206 AVDRWNGFQDALFYITKKELYPMQMKLYQII--SANQQLDSQQGGEGSIGSYIVP--ESL 261 AV WN F A+ Y+ ++P+Q+ L QI+ S+ Q D + G G +++P +++ Sbjct: 204 AVTYWNTFMQAILYLNDSSMWPIQVLLRQIVIMSSGMQGDLTELGAG----FVMPPEQTI 259 Query: 262 KAASVMFTTLPILLIYPKLQKYFVDGVMTGAIKG 295 K A ++ T+P+L++YP +QK+F G + G++KG Sbjct: 260 KMAVIVVATIPVLIVYPFIQKHFAKGALLGSVKG 293 >BS_ytcP [G] COG0395 ABC-type sugar transport system, permease component Length = 286 Score = 244 bits (623), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 124/271 (45%), Positives = 192/271 (70%), Gaps = 9/271 (3%) Query: 29 CIVPFLYMIALSFSSNEAIIAQKVGLWPVEFTAETYKTILSDVDMLY-TLGYSIVLTIFY 87 C++PF+++IA SF++ E ++++K L P F+ + Y+ I S D++Y +L S+ +T+ Sbjct: 21 CVLPFIHVIAASFATVEEVVSKKFILIPTTFSLDAYRYIFS-TDIIYKSLLVSVFVTVIG 79 Query: 88 TGVCMFLTICAAYPLTKKRLMGRGFILTALVFTMYFSGGLIPSYILVKNLGMMNTVWSLV 147 T V MFL+ AY L+++ L+GR ++ +VFTM FSGG+IP++++VK+LG++++ W+L+ Sbjct: 80 TAVSMFLSSLMAYGLSRRDLIGRQPLMFLVVFTMLFSGGMIPTFLVVKSLGLLDSYWALI 139 Query: 148 LPGAMSVFNMIILKTFFTNLPESLEESAAIDGCSDLGILIKIVLPLSLPSIATLSLFYAV 207 LP A++ FN+IILK FF N+P SLEESA IDGC+DLGI KIVLPLSLP+IAT+SLFYAV Sbjct: 140 LPTAINAFNLIILKNFFQNIPSSLEESAKIDGCNDLGIFFKIVLPLSLPAIATISLFYAV 199 Query: 208 DRWNGFQDALFYITKKELYPMQMKLYQ--IISANQQLDSQQGGEGSIGSYIVPE-SLKAA 264 WN + A+ Y+ +P+Q+ L Q I+S+ Q D + G GS PE ++K A Sbjct: 200 TYWNTYMTAILYLNDSAKWPIQVLLRQIVIVSSGMQGDMSEMGSGSPP----PEQTIKMA 255 Query: 265 SVMFTTLPILLIYPKLQKYFVDGVMTGAIKG 295 ++ T+P+LL+YP +QK+F G + G++KG Sbjct: 256 VIVVATIPVLLVYPFIQKHFAKGALLGSVKG 286 >BS_lplC [G] COG0395 ABC-type sugar transport system, permease component Length = 295 Score = 233 bits (593), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 118/267 (44%), Positives = 176/267 (65%), Gaps = 4/267 (1%) Query: 30 IVPFLYMIALSFSSNEAIIAQKVGLWPVEFTAETYKTILSDVDMLYTLGYSIVLTIFYTG 89 I+PFLY+IA SF++ + + ++P FT + YK + S L ++G SI +T+ T Sbjct: 32 ILPFLYIIAGSFATEAELAQRSFFIFPKTFTLDAYKYVFSTPTFLRSMGVSIFITVVGTA 91 Query: 90 VCMFLTICAAYPLTKKRLMGRGFILTALVFTMYFSGGLIPSYILVKNLGMMNTVWSLVLP 149 V +F T AYPL K+ + GR +L ++F+M FSGG+IP+Y++VK+LG+++T W+L+LP Sbjct: 92 VQLFFTFTMAYPLAKRHVKGRNLLLNLVIFSMLFSGGMIPTYLVVKSLGLLDTYWALILP 151 Query: 150 GAMSVFNMIILKTFFTNLPESLEESAAIDGCSDLGILIKIVLPLSLPSIATLSLFYAVDR 209 A++ FN+II+K FF LP LEESA IDGCS++G+ +I LPLS P IAT +LFYAV Sbjct: 152 MAINPFNLIIIKNFFQQLPRELEESAKIDGCSEIGVFWRIALPLSKPVIATFALFYAVGI 211 Query: 210 WNGFQDALFYITKKELYPMQMKLYQIISANQQLDSQQGGEGSIGSYIVPES-LKAASVMF 268 WN F AL YI +P+QM L Q ++ L + G ++ + + PE +K A ++ Sbjct: 212 WNDFFHALLYINDSAKWPLQMVLRQ-VTILSDLTATNG--DTMQNAVPPEQGIKLAVIVI 268 Query: 269 TTLPILLIYPKLQKYFVDGVMTGAIKG 295 TLPIL +YP LQK+F G++ G++KG Sbjct: 269 ATLPILAVYPFLQKHFAKGMLIGSVKG 295 >SP1797 [G] COG0395 ABC-type sugar transport system, permease component Length = 305 Score = 205 bits (521), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 99/268 (36%), Positives = 173/268 (64%), Gaps = 1/268 (0%) Query: 29 CIVPFLYMIALSFSSNEAIIAQKVGLWPVEFTAETYKTILSDVDMLYTLGYSIVLTIFYT 88 ++P LY++ SF + ++++ + P ++T E Y+ + SD +L S++ + + Sbjct: 38 TLLPLLYIVVASFMDPKVLVSRGISFNPADWTVEGYQRVFSDQSILRGFINSLLYSFGFA 97 Query: 89 GVCMFLTICAAYPLTKKRLMGRGFILTALVFTMYFSGGLIPSYILVKNLGMMNTVWSLVL 148 + + L++ AYPL+KK L+GR +I L+ TM+F GGL+P+Y+LVK LGM+NT W++++ Sbjct: 98 ALTVLLSVFTAYPLSKKDLVGRRWINYFLIVTMFFGGGLVPTYLLVKELGMLNTPWAIIV 157 Query: 149 PGAMSVFNMIILKTFFTNLPESLEESAAIDGCSDLGILIKIVLPLSLPSIATLSLFYAVD 208 PGA++V+N+I+ + +F LPE L E+A IDG +DL I KI+LPL+ P + L L+ V Sbjct: 158 PGAVNVWNIILARAYFQGLPEELVEAAVIDGANDLQIFFKIMLPLAKPIMFVLFLYAFVG 217 Query: 209 RWNGFQDALFYITKKELYPMQMKLYQIISANQQLDSQQGGEGSIGSY-IVPESLKAASVM 267 +WN + DA+ YI L P+Q+ L +I+ +Q G + ++ + E +K A+++ Sbjct: 218 QWNSYFDAMIYIKDPNLEPLQLVLRKILIQSQPGQDMIGAQAAMNEMKRLAELIKYATIV 277 Query: 268 FTTLPILLIYPKLQKYFVDGVMTGAIKG 295 ++LP++++YP QKYF G+M G++KG Sbjct: 278 ISSLPLIVMYPFFQKYFDKGIMAGSLKG 305 >BH1066 [G] COG0395 ABC-type sugar transport system, permease component Length = 293 Score = 195 bits (496), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 106/269 (39%), Positives = 164/269 (60%), Gaps = 6/269 (2%) Query: 29 CIVPFLYMIALSFSSNEAIIAQKVGLWPVEFTAETYKTILSDVDMLYTLGYSIVLTIFYT 88 CI+P +++ A+S S + A A V PV+FT + Y+ +++ + + + S+V + T Sbjct: 27 CILPLVHIFAVSLSGSGAAAANLVMFLPVDFTLDAYERTIANDNFIRSFLISVVRVVLGT 86 Query: 89 GVCMFLTICAAYPLTK--KRLMGRGFILTALVFTMYFSGGLIPSYILVKNLGMMNTVWSL 146 + M +CAAY L+K + GR F + V TM F+GGL+P+Y++V LG+ NT+W+L Sbjct: 87 VISMGAMLCAAYALSKEDRDFKGRKFYIWFFVITMLFNGGLVPTYMVVTGLGLTNTIWAL 146 Query: 147 VLPGAMSVFNMIILKTFF-TNLPESLEESAAIDGCSDLGILIKIVLPLSLPSIATLSLFY 205 VLP A++ FN+I+L FF T +P+SLEESA IDG + I +KI LP+S+P+IAT+SLF Sbjct: 147 VLPPAINAFNLILLLNFFRTAVPKSLEESAFIDGANHFQIFLKIYLPISVPAIATVSLFT 206 Query: 206 AVDRWNGFQDALFYITKKELYPMQMKLYQIISANQQLDSQQGGEGSIGSYIVPESLKAAS 265 V WN + D + Y YP+Q L I+ Q D Q + + +++AA Sbjct: 207 MVFHWNSWFDGMIYNNDARNYPLQTFLQTIVV---QQDFSQITDAETLRNLSQRTVQAAQ 263 Query: 266 VMFTTLPILLIYPKLQKYFVDGVMTGAIK 294 + LP+L++YP +QKYFV G++ GA K Sbjct: 264 IFIAALPMLIVYPFIQKYFVKGIVLGAEK 292 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.326 0.140 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 18,389,050 Number of extensions: 715851 Number of successful extensions: 3298 Number of sequences better than 1.0e-05: 152 Number of HSP's gapped: 3126 Number of HSP's successfully gapped: 152 Length of query: 295 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 189 Effective length of database: 26,153,027 Effective search space: 4942922103 Effective search space used: 4942922103 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 115 (48.9 bits)