BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0470.0001.p
         (1026 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC3086 [N] COG5492 Bacterial surface proteins containing Ig-lik...    54   1e-06
CAC2367 [N] COG5492 Bacterial surface proteins containing Ig-lik...    52   6e-06

>CAC3086 [N] COG5492 Bacterial surface proteins containing Ig-like domains
          Length = 498

 Score = 54.3 bits (129), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 101/208 (48%), Gaps = 20/208 (9%)

Query: 470 LKEGDNILRFWKGNNLAEIDSMDI------FKLDASEILFESPGYTLGLGETRNLPLXXX 523
           L EG ++++   GNN + +D+ DI       +LD +  L ++   TL +G+T  L     
Sbjct: 150 LTEGVHVVQIDLGNN-STLDAFDIDDSGYLIQLDKNLTLNKT-SETLTVGQTDTLSQVVV 207

Query: 524 XXXXXXXXXXXXFFSSSNPKVAVIDGGTQVKAVGAGSTTITATYNGKMTTANVTVIAEPE 583
                        ++SS+P +A +D   +V AV AGS  ITAT N      +   +   +
Sbjct: 208 PDNAPDKSLT---WTSSDPSIANVDTFGKVTAVKAGSAIITATTNDGSNLTSSCAVNVKD 264

Query: 584 SVQSVVMSGLAGILTSGQTSQPLQVTARYNNYEVQNVTADAQYTSSNPGVARIDSNSATR 643
           S  ++ ++     LT G  +  L  T    +   +NVT    +TSS+P +A +D   A+ 
Sbjct: 265 SNTTISLNKTTDNLTVGA-NDTLTATITPTDAVDKNVT----WTSSDPSIATVD---ASG 316

Query: 644 SVYAVKPGTTLITGEY-NGKKAAFHLTV 670
            + AVKPGT  +T    NGK A+ ++TV
Sbjct: 317 KITAVKPGTVTVTATTDNGKTASCNVTV 344


>CAC2367 [N] COG5492 Bacterial surface proteins containing Ig-like domains
          Length = 752

 Score = 51.6 bits (122), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 58/120 (48%), Gaps = 8/120 (6%)

Query: 537 FSSSNPKVAVIDGGTQVKAVGAGSTTITATYNGKMTTANVTVIAEPESVQSVVMSGLAGI 596
           ++SSN  VA +D   +V A+ AG+ TITAT NG +T ++   +  P +V SV +S     
Sbjct: 190 WNSSNTAVATVDADGKVTAISAGTATITATVNGNLTASSNITVTSPITVASVSLSKTTDS 249

Query: 597 LTSGQTSQPLQVTARYNNYEVQNVTADAQYTSSNPGVARIDSNSATRSVYAVKPGTTLIT 656
           L  G T      T   N         D  + SSN  VA +D+   T  V A+  GT  IT
Sbjct: 250 LNVGDTD-----TLTANILPTNATKKDVTWKSSNNSVATVDN---TGKVTAISAGTANIT 301


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.314    0.131    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 77,360,212
Number of extensions: 3291526
Number of successful extensions: 14651
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 14652
Number of HSP's successfully gapped: 2
Length of query: 1026
Length of database: 38,378,431
Length adjustment: 116
Effective length of query: 910
Effective length of database: 24,999,687
Effective search space: 22749715170
Effective search space used: 22749715170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 121 (51.2 bits)