BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0462.0008.p
         (163 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH0479 [R] COG0457 FOG: TPR repeat                                    148   3e-36
YPO3051 [R] COG0457 FOG: TPR repeat                                   110   9e-25
lin0965 [R] COG0457 FOG: TPR repeat                                    99   2e-21
DR1267 [R] COG0457 FOG: TPR repeat                                     52   5e-07

>BH0479 [R] COG0457 FOG: TPR repeat
          Length = 673

 Score =  148 bits (374), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 24/163 (14%), Positives = 41/163 (25%)

Query: 1   MNMTHSIETAVALRNAGKXXXXXXXXXXXXSGDEENAGLLYQLAWTHDVLGLEREAVPYY 60
           M +    + AV                       + A L+    +    +          
Sbjct: 1   MRLNPGQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAA 60

Query: 61  ERSLSLGLPPEQRMGAILGLGSTYRTLGEYPRSKEVLEQGVGEFPQQKEFQAFLAMTLHN 120
                       R  A   + ST+ TLG     +E    G+       +    LA+    
Sbjct: 61  REMKERVGQTLGRKEARGLMISTFHTLGLDIIKREYAALGMKANFSLFDDTDQLALLKEL 120

Query: 121 LGEHSEAMKLLLTLVAETSSDEGIGSYRKAILYYSDKLEQVWE 163
                E  K+LL  +  T S+        +    S   E+   
Sbjct: 121 TEGLIEDDKVLLQQLISTISNWKNDLKTPSQAAASAIGERDRI 163


>YPO3051 [R] COG0457 FOG: TPR repeat
          Length = 673

 Score =  110 bits (275), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 16/159 (10%), Positives = 35/159 (22%), Gaps = 3/159 (1%)

Query: 3   MTHSIETAVALRNAGKXXXXXXXXXXXXSGDEENAGLLYQLAWTHDVLGLEREAVPYYER 62
               +                              G  YQ      V    + A    ER
Sbjct: 10  AVEFVTG---PCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66

Query: 63  SLSLGLPPEQRMGAILGLGSTYRTLGEYPRSKEVLEQGVGEFPQQKEFQAFLAMTLHNLG 122
                   E R   I    +    + +   +   ++     F    +      +T   + 
Sbjct: 67  VGQTLGRKEARGLMISTFHTLGLDIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE 126

Query: 123 EHSEAMKLLLTLVAETSSDEGIGSYRKAILYYSDKLEQV 161
           +    ++ L++ ++   +D    S   A           
Sbjct: 127 DDKVLLQQLISTISNWKNDLKTPSQAAASAIGERDRIFA 165


>lin0965 [R] COG0457 FOG: TPR repeat
          Length = 673

 Score = 99.4 bits (246), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 7/128 (5%), Positives = 21/128 (16%)

Query: 35  ENAGLLYQLAWTHDVLGLEREAVPYYERSLSLGLPPEQRMGAILGLGSTYRTLGEYPRSK 94
               ++             +          +      +            R L       
Sbjct: 27  GKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKEARGLMISTFHT 86

Query: 95  EVLEQGVGEFPQQKEFQAFLAMTLHNLGEHSEAMKLLLTLVAETSSDEGIGSYRKAILYY 154
             L+    E+        F      +     + +   L    +    + I +        
Sbjct: 87  LGLDIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIEDDKVLLQQLISTISNWKNDL 146

Query: 155 SDKLEQVW 162
               +   
Sbjct: 147 KTPSQAAA 154


>DR1267 [R] COG0457 FOG: TPR repeat
          Length = 673

 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 12/99 (12%), Positives = 22/99 (22%), Gaps = 2/99 (2%)

Query: 40  LYQLAWTHDVLGLEREAVPYYERSLSLGLPPEQRMGAILGLGSTYRTLGEYPRSKEVL-- 97
            YQ      V    + A    ER        E R   I    +    + +   +   +  
Sbjct: 44  GYQARHIAAVTFTNKAAREMKERVGQTLGRKEARGLMISTFHTLGLDIIKREYAALGMKA 103

Query: 98  EQGVGEFPQQKEFQAFLAMTLHNLGEHSEAMKLLLTLVA 136
              + +   Q      L   L    +      +      
Sbjct: 104 NFSLFDDTDQLALLKELTEGLIEDDKVLLQQLISTISNW 142


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.314    0.132    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 11,349,585
Number of extensions: 443656
Number of successful extensions: 633
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 634
Number of HSP's successfully gapped: 4
Length of query: 163
Length of database: 38,378,431
Length adjustment: 98
Effective length of query: 65
Effective length of database: 27,075,699
Effective search space: 1759920435
Effective search space used: 1759920435
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 111 (47.4 bits)