BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0462.0006.p
         (201 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

TM1030 [K] COG1309 Transcriptional regulator                           60   3e-09
aq_281 [K] COG1309 Transcriptional regulator                           59   4e-09
RSc0698 [K] COG1309 Transcriptional regulator                          59   6e-09
NMB1717 [K] COG1309 Transcriptional regulator                          58   1e-08
NMA1971 [K] COG1309 Transcriptional regulator                          58   1e-08

>TM1030 [K] COG1309 Transcriptional regulator
          Length = 200

 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 7/71 (9%)

Query: 6  IHKHTAILDAAYELFGSGGFYETKISEVAERAGIAKGTVYLYFKNKEEL----FMAVT-- 59
          + K  AIL AA E+FG  G+      E+AE+AG+AKG ++ YFKNKEEL    +M+VT  
Sbjct: 2  LSKRDAILKAAVEVFGKKGYDRATTDEIAEKAGVAKGLIFHYFKNKEELYYQAYMSVTEK 61

Query: 60 -RRDCEGFLQQ 69
           +++ E FL +
Sbjct: 62 LQKEFENFLMK 72


>aq_281 [K] COG1309 Transcriptional regulator
          Length = 179

 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 44/70 (62%)

Query: 2  SSASIHKHTAILDAAYELFGSGGFYETKISEVAERAGIAKGTVYLYFKNKEELFMAVTRR 61
          +  S+     I+ AA + F   GFY T+IS + E AG+A+GT Y+YFK+KEE+F  + ++
Sbjct: 2  NDMSVQTRERIIKAAAKEFAEKGFYNTQISHIVESAGVARGTFYIYFKSKEEVFEEILKK 61

Query: 62 DCEGFLQQLE 71
            E   ++++
Sbjct: 62 VVEDLKERIK 71


>RSc0698 [K] COG1309 Transcriptional regulator
          Length = 264

 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 66/138 (47%), Gaps = 9/138 (6%)

Query: 12  ILDAAYELFGSGGFYETKISEVAERAGIAKGTVYLYFKNKEELFMAVTRRDCEGFLQQLE 71
           ++ AA  LF + GF  T++ +VA  AG++KGTVYLYF NK ELF AV + +    L + E
Sbjct: 41  LVAAAMSLFVARGFAATRLEDVAAAAGVSKGTVYLYFANKVELFKAVVQENLLPVLAEGE 100

Query: 72  AKLQACSSLTGKLSVIAEHHLFYYYERKQH------TKLFFRAPNNNPELVAYMALFMEE 125
           A +    +  G    +    L  ++E          TKL      N P+L  Y    + +
Sbjct: 101 ALID---TFEGSSEALLHEILMGWWEMIGESPVSGLTKLLMAEAGNFPDLAQYYHEAVIQ 157

Query: 126 YMKAVVMVLLEGGASEPE 143
               + M +LE G +  E
Sbjct: 158 RCDRLFMSILERGMARGE 175


>NMB1717 [K] COG1309 Transcriptional regulator
          Length = 210

 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 3/96 (3%)

Query: 15  AAYELFGSGGFYETKISEVAERAGIAKGTVYLYFKNKEELFMAVTRRDCEGFLQQLEAKL 74
           AA E F   G   T ++E+A+ AG+ +G +Y +FKNKE+LF A+ +R C+     +    
Sbjct: 18  AALETFYRKGIARTSLNEIAQAAGVTRGALYWHFKNKEDLFDALFQRICDDIENCIA--- 74

Query: 75  QACSSLTGKLSVIAEHHLFYYYERKQHTKLFFRAPN 110
           Q      G    +  H L +++ER Q   ++++  N
Sbjct: 75  QDAEDAEGGSWAVFRHTLLHFFERLQSNDIYYKFHN 110


>NMA1971 [K] COG1309 Transcriptional regulator
          Length = 169

 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 9/96 (9%), Positives = 24/96 (25%), Gaps = 3/96 (3%)

Query: 15  AAYELFGSGGFYETKISEVAERAGIAKGTVYLYFKNKEELFMAVTRRDCEGFLQQLEAKL 74
           +  ++         ++    +        +    +  EE+     +              
Sbjct: 18  SGQKILKDIEAKLVELENRKKNLNETLLRISGAIELLEEVLEDQGKVSTPEVSDLEV--- 74

Query: 75  QACSSLTGKLSVIAEHHLFYYYERKQHTKLFFRAPN 110
           Q   S   ++ V     L   +  K+  +   R  N
Sbjct: 75  QEAESEIKEVEVPVVIRLPLEHAVKKLEETGLRVGN 110


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.321    0.135    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 13,667,958
Number of extensions: 485543
Number of successful extensions: 1135
Number of sequences better than 1.0e-05: 32
Number of HSP's gapped: 1138
Number of HSP's successfully gapped: 32
Length of query: 201
Length of database: 38,378,431
Length adjustment: 101
Effective length of query: 100
Effective length of database: 26,729,697
Effective search space: 2672969700
Effective search space used: 2672969700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)