BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0459.0040.p
         (108 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L108503 [K] COG1695 Predicted transcriptional regulators               69   2e-12
mll2486 [K] COG1695 Predicted transcriptional regulators               57   6e-09
SP0100 [K] COG1695 Predicted transcriptional regulators                57   7e-09
DR2079 [K] COG1695 Predicted transcriptional regulators                55   3e-08
alr3979 [K] COG1695 Predicted transcriptional regulators               50   7e-07

>L108503 [K] COG1695 Predicted transcriptional regulators
          Length = 116

 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 57/100 (57%)

Query: 2   ISSDVIRGYNDTFILYMLLDGESYGYEIAKNIRKLSDEKYIMKETTLYSAFTRLEKNGYI 61
           I  +++R   +  +L +L  G++Y Y I K +++ S+ +  + E TLY+ F RLEK+G I
Sbjct: 4   IPKEMLRAQTNVILLNVLKQGDNYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGII 63

Query: 62  CSFYKNETQGKRRTYYRITPEGLAYYHEKCAEWLITQEVV 101
            S++ +E+QG RR YYR+T  G          W    E++
Sbjct: 64  SSYWGDESQGGRRKYYRLTEIGHENMRLAFESWSRVDEII 103


>mll2486 [K] COG1695 Predicted transcriptional regulators
          Length = 108

 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 4/101 (3%)

Query: 8   RGYNDTFILYMLLDGESYGYEIAKNIRKLSDEKYIMKETTLYSAFTRLEKNGYICSFYKN 67
           +G  D  +L +L  GESYGYEIA  +    +    M E T+Y    R++ +G + +    
Sbjct: 11  KGALDLCVLAVLSRGESYGYEIASTLVAAVN----MGEGTIYPLMRRMQNDGLVATRLVE 66

Query: 68  ETQGKRRTYYRITPEGLAYYHEKCAEWLITQEVVNKFIKEL 108
            + G  R YYR+TP G   +     +W      V++ +++L
Sbjct: 67  SSSGPPRKYYRLTPLGQQAFEAHRRDWRSFAGAVDRLLEDL 107


>SP0100 [K] COG1695 Predicted transcriptional regulators
          Length = 108

 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 53/93 (56%), Gaps = 5/93 (5%)

Query: 14  FILYMLLDGESYGYEIAKNIRKLSDEKYIMKETTLYSAFTRLEKNGYICSFYKNETQGKR 73
            IL +L  G+SYGYEI++ I+ +++    +KE+TLY    +LE N ++ + Y  E QG+ 
Sbjct: 13  LILAVLEQGDSYGYEISQTIKLIAN----IKESTLYPILKKLEGNSFLTT-YSREFQGRM 67

Query: 74  RTYYRITPEGLAYYHEKCAEWLITQEVVNKFIK 106
           R YY +T  G+        EW +  + +N  I+
Sbjct: 68  RKYYSLTNGGIEQLLTLKDEWALYTDTINGIIE 100


>DR2079 [K] COG1695 Predicted transcriptional regulators
          Length = 134

 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 1/83 (1%)

Query: 2   ISSDVIRGYNDTFILYMLLDGESYGYEIAKNIRKLSDEKYIMKETTLYSAFTRLEKNGYI 61
           +  +++RG  D  +L  L DG  YG  I ++++  +D  +  KE TLY A  RLEK G+I
Sbjct: 24  LDGNLLRGTLDFLLLASLEDGPLYGLRIIQDVQDRTDGHFRFKEGTLYPALHRLEKRGWI 83

Query: 62  CSFYK-NETQGKRRTYYRITPEG 83
               + ++  G  R YY +T  G
Sbjct: 84  VGEQRPSDAGGPPRKYYELTEGG 106


>alr3979 [K] COG1695 Predicted transcriptional regulators
          Length = 359

 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 4/70 (5%), Positives = 8/70 (11%), Gaps = 2/70 (2%)

Query: 14 FILYMLLDGESYGYEIAKNIRKLSDEKYIMKETTLYSAFTRLEKNGYICSFYKN-ETQGK 72
              + +   +            +                RL   G              
Sbjct: 26 ASKMVAVVKANAYGHGLLET-ARTLPDADAFGVARLEEALRLRAGGITKPVLLLEGFFDA 84

Query: 73 RRTYYRITPE 82
          R         
Sbjct: 85 RDLPTISAQH 94


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.320    0.138    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 8,152,162
Number of extensions: 310546
Number of successful extensions: 821
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 828
Number of HSP's successfully gapped: 13
Length of query: 108
Length of database: 38,378,431
Length adjustment: 76
Effective length of query: 32
Effective length of database: 29,613,047
Effective search space: 947617504
Effective search space used: 947617504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)