BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0459.0031.p (271 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value NMA1811 [ET] COG0834 ABC-type amino acid transport/signal transd... 130 2e-30 NMB1612 [ET] COG0834 ABC-type amino acid transport/signal transd... 128 1e-29 YPO2512 [ET] COG0834 ABC-type amino acid transport/signal transd... 117 2e-26 STM0830 [ET] COG0834 ABC-type amino acid transport/signal transd... 117 3e-26 ZglnH [ET] COG0834 ABC-type amino acid transport/signal transduc... 114 2e-25 >NMA1811 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Length = 268 Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 129/225 (57%), Gaps = 5/225 (2%) Query: 40 KFASDASYAPMEYMDTD-KIKGFDIDFIKAVMEEAGIDYTVTNTGWDTMLSSVKQGTEYQ 98 + AS+A +AP E +D+ ++GFD+D + A+ + + WD++ ++ G + Sbjct: 40 RVASNAEFAPFESLDSKGNVEGFDVDLMNAMAKAGNFKIEFKHQPWDSLFPALNNG-DAD 98 Query: 99 AGLSSVSITDERKETYDYSIPYFESTNMIMVKEGSDIKNALDLKD-KKVAVQAATTADDL 157 +S V+ITD+RK++ D+S PYFE T +++V +G I ++ DLK+ KV V T D Sbjct: 99 VVMSGVTITDDRKQSMDFSDPYFEITQVVLVPKGKKISSSEDLKNMNKVGVVTGYTGDFS 158 Query: 158 MSGIMGVDNGNLKRFDSNAVALMELNSGGXXXXXXXXXXXNEYIKNNPNEKLTGIIDKEN 217 +S ++G DN + RF++ + + EL +GG Y+KNNP + + + + Sbjct: 159 VSKLLGNDNPKIARFENVPLIIKELENGGLDSVVSDSAVIANYVKNNPTKGMD-FVTLPD 217 Query: 218 FGSEYYGILYPKGSEWKAK-LDPAIKKIIENGKYAEIYKTWFGEE 261 F +E+YGI KG E K L+ A+KK+ E+G+Y +IY +F +E Sbjct: 218 FTTEHYGIAVRKGDEATVKMLNDALKKVRESGEYDKIYAKYFAKE 262 >NMB1612 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Length = 268 Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 129/225 (57%), Gaps = 5/225 (2%) Query: 40 KFASDASYAPMEYMDTD-KIKGFDIDFIKAVMEEAGIDYTVTNTGWDTMLSSVKQGTEYQ 98 + AS+A +AP E +D+ ++GFD+D + A+ + + WD++ ++ G + Sbjct: 40 RVASNAEFAPFESLDSKGNVEGFDVDLMNAMAKAGNFKIEFKHQPWDSLFPALNNG-DAD 98 Query: 99 AGLSSVSITDERKETYDYSIPYFESTNMIMVKEGSDIKNALDLKD-KKVAVQAATTADDL 157 +S V+ITD+RK++ D+S PYFE T +++V +G + ++ DLK+ KV V T D Sbjct: 99 VVMSGVTITDDRKQSMDFSDPYFEITQVVLVPKGKKVSSSEDLKNMNKVGVVTGYTGDFS 158 Query: 158 MSGIMGVDNGNLKRFDSNAVALMELNSGGXXXXXXXXXXXNEYIKNNPNEKLTGIIDKEN 217 +S ++G DN + RF++ + + EL +GG Y+KNNP + + + + Sbjct: 159 VSKLLGNDNPKIARFENVPLIIKELENGGLDSVVSDSAVIANYVKNNPAKGMD-FVTLPD 217 Query: 218 FGSEYYGILYPKGSEWKAK-LDPAIKKIIENGKYAEIYKTWFGEE 261 F +E+YGI KG E K L+ A++K+ E+G+Y +IY +F +E Sbjct: 218 FTTEHYGIAVRKGDEATVKMLNDALEKVRESGEYDKIYAKYFAKE 262 >YPO2512 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Length = 247 Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 123/222 (55%), Gaps = 6/222 (2%) Query: 42 ASDASYAPMEYMDTDKIKGFDIDFIKAVMEEAGIDYTVTNTGWDTMLSSVKQGTEYQAGL 101 A+D ++ P E+ DK GFDID A+ ++ + YT+ + ++ ++ Q L Sbjct: 30 ATDTAFVPFEFKQGDKYVGFDIDLWDAIAKKLDLKYTLKPMDFSGIIPAL-QTKNVDLAL 88 Query: 102 SSVSITDERKETYDYSIPYFESTNMIMVK-EGSDIKNALDLKDKKVAVQAATTADDLMSG 160 + ++ITDERK+ D+S Y+ S ++MVK + +DIK+ DL+ K +AV++ T + D Sbjct: 89 AGITITDERKKAVDFSDGYYNSGLLVMVKADNNDIKSEADLQGKVLAVKSGTGSVDYAKA 148 Query: 161 IMGVDNGNLKRFDSNAVALMELNSGGXXXXXXXXXXXNEYIKNNPNEKLTGIIDKENFGS 220 + +L++F + A +EL +G +IK N + + E+ + Sbjct: 149 --NIKTKDLRQFPNIDNAYLELGTGRADAVLHDTPNILYFIKTAGNGQFKAV--GESIKA 204 Query: 221 EYYGILYPKGSEWKAKLDPAIKKIIENGKYAEIYKTWFGEEP 262 + YG+ +P+GS+ + K++ A+K + E+G YAEIYK WFG EP Sbjct: 205 QQYGVAFPQGSDLREKVNAALKSLKEDGTYAEIYKKWFGVEP 246 >STM0830 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Length = 248 Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 121/223 (54%), Gaps = 7/223 (3%) Query: 42 ASDASYAPMEYMDTDKIKGFDIDFIKAVMEEAGIDYTVTNTGWDTMLSSVKQGTEYQAGL 101 A+D ++ P E+ DK GFD+D A+ +E +DYT+ + ++ ++ Q L Sbjct: 30 ATDTAFVPFEFKQGDKYVGFDVDLWDAIAKELKLDYTLKPMDFSGIIPAL-QTKNIDLAL 88 Query: 102 SSVSITDERKETYDYSIPYFESTNMIMVK-EGSDIKNALDLKDKKVAVQAATTADDLMSG 160 + ++ITDERK+ D+S Y++S ++MVK +DIK+ DL K VAV++ T + D Sbjct: 89 AGITITDERKKAIDFSDGYYKSGLLVMVKANNNDIKSVKDLDGKVVAVKSGTGSVDYAKA 148 Query: 161 IMGVDNGNLKRFDSNAVALMELNSGGXXXXXXXXXXXNEYIKNNPNEKLTGIIDKENFGS 220 + +L++F + A MEL + +IK N + + E+ + Sbjct: 149 --NIKTKDLRQFPNIDNAYMELGTNRADAVLHDTPNILYFIKTAGNGQFKAV--GESLEA 204 Query: 221 EYYGILYPKGS-EWKAKLDPAIKKIIENGKYAEIYKTWFGEEP 262 + YG+ +PKGS E + K++ A+K + ENG Y EIYK WFG EP Sbjct: 205 QQYGVAFPKGSDELREKVNGALKTLRENGTYNEIYKKWFGTEP 247 >ZglnH [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Length = 248 Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 120/223 (53%), Gaps = 7/223 (3%) Query: 42 ASDASYAPMEYMDTDKIKGFDIDFIKAVMEEAGIDYTVTNTGWDTMLSSVKQGTEYQAGL 101 A+D ++ P E+ DK GFD+D A+ +E +DY + + ++ ++ Q L Sbjct: 30 ATDTAFVPFEFKQGDKYVGFDVDLWAAIAKELKLDYELKPMDFSGIIPAL-QTKNVDLAL 88 Query: 102 SSVSITDERKETYDYSIPYFESTNMIMVK-EGSDIKNALDLKDKKVAVQAATTADDLMSG 160 + ++ITDERK+ D+S Y++S ++MVK +D+K+ DL K VAV++ T + D Sbjct: 89 AGITITDERKKAIDFSDGYYKSGLLVMVKANNNDVKSVKDLDGKVVAVKSGTGSVDYAKA 148 Query: 161 IMGVDNGNLKRFDSNAVALMELNSGGXXXXXXXXXXXNEYIKNNPNEKLTGIIDKENFGS 220 + +L++F + A MEL + +IK N + + D + + Sbjct: 149 --NIKTKDLRQFPNIDNAYMELGTNRADAVLHDTPNILYFIKTAGNGQFKAVGD--SLEA 204 Query: 221 EYYGILYPKGS-EWKAKLDPAIKKIIENGKYAEIYKTWFGEEP 262 + YGI +PKGS E + K++ A+K + ENG Y EIYK WFG EP Sbjct: 205 QQYGIAFPKGSDELRDKVNGALKTLRENGTYNEIYKKWFGTEP 247 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.312 0.130 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,830,368 Number of extensions: 711377 Number of successful extensions: 1415 Number of sequences better than 1.0e-05: 117 Number of HSP's gapped: 1244 Number of HSP's successfully gapped: 120 Length of query: 271 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 166 Effective length of database: 26,268,361 Effective search space: 4360547926 Effective search space used: 4360547926 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 115 (48.9 bits)