BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0459.0030.p (215 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin2352_2 [E] COG0765 ABC-type amino acid transport system, perm... 174 6e-44 SA1675_2 [E] COG0765 ABC-type amino acid transport system, perme... 153 2e-37 STM0592 [P] COG0609 ABC-type Fe3+-siderophore transport system, ... 151 8e-37 SP0453_2 [E] COG0765 ABC-type amino acid transport system, perme... 147 1e-35 SPy0277_2 [E] COG0765 ABC-type amino acid transport system, perm... 146 2e-35 >lin2352_2 [E] COG0765 ABC-type amino acid transport system, permease component Length = 215 Score = 174 bits (442), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 83/172 (48%), Positives = 120/172 (69%), Gaps = 1/172 (0%) Query: 44 KMAPKAYFRWPFHCYINFFRGTPLYVQILIVHFGVIPAFYGSTNVLMTSFVALSLNSAAY 103 K+A + RWP CYI F RGTPL +QI IV FG + ++ +ALSLNSAAY Sbjct: 41 KLAKTRWLRWPAACYIEFVRGTPLLIQIFIVFFGT-QIIGMDVSAFVSGCIALSLNSAAY 99 Query: 104 SAEIFRAGIQSIDPGQREAAVSLGMTRAQAMRFIILPQAVKRMVPAFGNEFIVLVKDSSL 163 AEI RAGI +++ GQ EAA SLGMT+ +MR+IILPQAVK ++PA GNEF+ ++K+SS+ Sbjct: 100 VAEIIRAGISAVNKGQMEAARSLGMTQGASMRYIILPQAVKNILPALGNEFVTVIKESSI 159 Query: 164 LALIAAPEIMYWSNTMKGQYLRIWEPYLTAALIYFILTYSLSKLLNYIERKV 215 +++I E+M+ + ++G + + P + +LIYF+LT+SLS+LL ER++ Sbjct: 160 VSVIGVTELMFMTGVVQGASFKPFIPLIITSLIYFVLTFSLSRLLGVAERRM 211 >SA1675_2 [E] COG0765 ABC-type amino acid transport system, permease component Length = 205 Score = 153 bits (386), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 72/172 (41%), Positives = 111/172 (64%) Query: 44 KMAPKAYFRWPFHCYINFFRGTPLYVQILIVHFGVIPAFYGSTNVLMTSFVALSLNSAAY 103 K++ W YI RGTP+ VQ+ IV FG+ A + L+ +AL +NS+AY Sbjct: 30 KLSKIKIISWIASIYIEILRGTPMLVQVFIVFFGITAALGLDISALVCGTIALVINSSAY 89 Query: 104 SAEIFRAGIQSIDPGQREAAVSLGMTRAQAMRFIILPQAVKRMVPAFGNEFIVLVKDSSL 163 AEI RAGI ++D GQ EAA SLG+ Q M+ +I+PQA+K ++PA GNEF+ L+K+SS+ Sbjct: 90 IAEIIRAGINAVDKGQMEAARSLGLNYRQTMKSVIMPQAIKNILPALGNEFVTLIKESSI 149 Query: 164 LALIAAPEIMYWSNTMKGQYLRIWEPYLTAALIYFILTYSLSKLLNYIERKV 215 ++ I EIM+ + ++G + P L AA +YF+LT+ L++++N IE ++ Sbjct: 150 VSTIGVGEIMFNAQVVQGISFDPFTPLLVAAALYFVLTFVLTRIMNMIEGRL 201 >STM0592 [P] COG0609 ABC-type Fe3+-siderophore transport system, permease component Length = 335 Score = 151 bits (381), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 11/211 (5%), Positives = 39/211 (18%), Gaps = 1/211 (0%) Query: 5 FDIIAHYLPVLLRGTAFTXXXXXXXXXXXXXXXXXXXFGKMAPKAYFRWPFHCYINFFRG 64 F + + L R Sbjct: 5 FSVTRAFAVPGLLLLLSLAAVLSLVIGAKPLPAAVVLEAFTGVCQSADCTIVLDARLPRT 64 Query: 65 TPLYVQILIVHFGVIPAFYGSTNVLMTSFVALSLNSAAYSAEIFRAGIQSIDPGQREAAV 124 + + T + L +N+ A A + A + + + Sbjct: 65 LAGLLAGGALGLA-GALMQTLTRNPLADPGILGVNNGASFAIVLGAALFGFSTPLEQLFM 123 Query: 125 SLGMTRAQAMRFIILPQAVKRMVPAFGNEFIVLVKDSSLLALIAAPEIMYWSNTMKGQYL 184 + ++ + + + L L + ++ + ++ Sbjct: 124 AFSGALIASLIVAFTGSQGGGQLSPVRLTLAGVALGAVLEGLTSGIALLNPEVYDQLRFW 183 Query: 185 RIWEPYLTAALIYFILTYSLSKLLNYIERKV 215 + + + + + Sbjct: 184 QAGSLDIRSLQTLKVALAPVVIAGIVALFLS 214 >SP0453_2 [E] COG0765 ABC-type amino acid transport system, permease component Length = 196 Score = 147 bits (370), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 65/162 (40%), Positives = 110/162 (67%) Query: 53 WPFHCYINFFRGTPLYVQILIVHFGVIPAFYGSTNVLMTSFVALSLNSAAYSAEIFRAGI 112 W + YI FRGTP+ VQ +++++G AF + + + + +S+N+ AY EI R GI Sbjct: 16 WVLNVYIEIFRGTPMIVQSMVIYYGTAQAFGINLDRTLAAIFIVSINTGAYMTEIVRGGI 75 Query: 113 QSIDPGQREAAVSLGMTRAQAMRFIILPQAVKRMVPAFGNEFIVLVKDSSLLALIAAPEI 172 ++D GQ EAA +LGMT Q MR I+LPQ V+ ++PA GNEF++ +KD+S+L +I+ E+ Sbjct: 76 LAVDKGQFEAATALGMTHNQTMRKIVLPQVVRNILPATGNEFVINIKDTSVLNVISVVEL 135 Query: 173 MYWSNTMKGQYLRIWEPYLTAALIYFILTYSLSKLLNYIERK 214 + NT+ Q + ++ + A+IYF+LT++++++L +IER+ Sbjct: 136 YFSGNTVATQTYQYFQTFTIIAVIYFVLTFTVTRILRFIERR 177 >SPy0277_2 [E] COG0765 ABC-type amino acid transport system, permease component Length = 239 Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 75/209 (35%), Positives = 120/209 (57%), Gaps = 10/209 (4%) Query: 16 LRGTAFTXXXXXXXXXXXXXXXXXXXFGKMAPKA----------YFRWPFHCYINFFRGT 65 LRGT T + APKA F W YI FRGT Sbjct: 10 LRGTGMTLLISMVGTITGLFIGLLIGIFRTAPKAKHKVAALGQKLFGWLLTIYIEIFRGT 69 Query: 66 PLYVQILIVHFGVIPAFYGSTNVLMTSFVALSLNSAAYSAEIFRAGIQSIDPGQREAAVS 125 P+ VQ +++++G AF S + + + +S+N+ AY +EI R GI ++D GQ +AA + Sbjct: 70 PMIVQSMVIYYGTAQAFGISIDRTLAAIFIVSINTGAYMSEIVRGGIFAVDKGQFKAATA 129 Query: 126 LGMTRAQAMRFIILPQAVKRMVPAFGNEFIVLVKDSSLLALIAAPEIMYWSNTMKGQYLR 185 LG T Q MR I+LPQ V+ ++PA GNEF++ +KD+S+L +I+ E+ + NT+ Q + Sbjct: 130 LGFTHGQTMRKIVLPQVVRNILPATGNEFVINIKDTSVLNVISVVELYFSGNTVATQTYQ 189 Query: 186 IWEPYLTAALIYFILTYSLSKLLNYIERK 214 ++ + A+IYF+LT++++++L YIER+ Sbjct: 190 YFQTFTIIAIIYFVLTFTVTRILRYIERR 218 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.330 0.142 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 13,293,357 Number of extensions: 432054 Number of successful extensions: 1669 Number of sequences better than 1.0e-05: 198 Number of HSP's gapped: 1473 Number of HSP's successfully gapped: 198 Length of query: 215 Length of database: 38,378,431 Length adjustment: 102 Effective length of query: 113 Effective length of database: 26,614,363 Effective search space: 3007423019 Effective search space used: 3007423019 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 113 (48.1 bits)