BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0459.0029.p (243 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin2353 [E] COG1126 ABC-type polar amino acid transport system, ... 339 2e-93 SA1674 [E] COG1126 ABC-type polar amino acid transport system, A... 322 3e-88 L37916 [E] COG1126 ABC-type polar amino acid transport system, A... 318 7e-87 SPy1506 [E] COG1126 ABC-type polar amino acid transport system, ... 317 8e-87 CAC0112 [E] COG1126 ABC-type polar amino acid transport system, ... 317 9e-87 >lin2353 [E] COG1126 ABC-type polar amino acid transport system, ATPase component Length = 64 Score = 339 bits (870), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 0/240 (0%), Positives = 0/240 (0%) Query: 4 MISVRHLHKSFGAHKVLTDINVDIHAREVVVVIGPSGSGKSTFLRCLNLLEQPQEGDIMI 63 M F +T + + R + L + G+ Sbjct: 1 MRYDNVKPCPFCGCPSVTVKAISGYYRAKCNGCESRTGYGGSEKEALERWNKRTTGNNNG 60 Query: 64 EGTSLMAKSTRINDIRTELGMVFQQFNLFPHKKVIENIMLAPVRVRKWPAEQARRKALEL 123 Sbjct: 61 120 Query: 124 LDKVGLSEKAEAYPASLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLAVMK 183 Sbjct: 121 180 Query: 184 ELAREGMTMVVVTHEMGFAREVGDRVLFMEQGAVVEEGHPEQLFSHPSHERTRAFLSKVL 243 Sbjct: 181 240 >SA1674 [E] COG1126 ABC-type polar amino acid transport system, ATPase component Length = 242 Score = 322 bits (825), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 148/241 (61%), Positives = 193/241 (80%) Query: 3 PMISVRHLHKSFGAHKVLTDINVDIHAREVVVVIGPSGSGKSTFLRCLNLLEQPQEGDIM 62 P+I + +L+K FG ++VL DIN++I+ EVV +IGPSGSGKST LRC+NLLE P +G ++ Sbjct: 2 PVIKINNLNKVFGDNEVLKDINLEINQGEVVAIIGPSGSGKSTLLRCMNLLEVPTKGQVI 61 Query: 63 IEGTSLMAKSTRINDIRTELGMVFQQFNLFPHKKVIENIMLAPVRVRKWPAEQARRKALE 122 EG L K T+++ +R ++GMVFQ FNLFPHKKV++NI+LAP ++K ++ ++AL Sbjct: 62 FEGNDLTEKGTQVDKLRQKMGMVFQNFNLFPHKKVVDNIILAPKLLKKDNNDELHKEALS 121 Query: 123 LLDKVGLSEKAEAYPASLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLAVM 182 LLDKVGL EKA+ YP LSGGQ QRVAIARALAM P ++LFDEPTSALDPE+VG+VL VM Sbjct: 122 LLDKVGLKEKADVYPNQLSGGQKQRVAIARALAMHPDVILFDEPTSALDPEVVGDVLKVM 181 Query: 183 KELAREGMTMVVVTHEMGFAREVGDRVLFMEQGAVVEEGHPEQLFSHPSHERTRAFLSKV 242 K+LA+EGMTMVVVTHEMGFA++V D+V+FM G VVE G P ++F P HERT+ FL++V Sbjct: 182 KDLAKEGMTMVVVTHEMGFAKDVSDKVIFMADGVVVESGTPVEIFEQPQHERTQNFLARV 241 Query: 243 L 243 L Sbjct: 242 L 242 >L37916 [E] COG1126 ABC-type polar amino acid transport system, ATPase component Length = 244 Score = 318 bits (814), Expect = 7e-87, Method: Compositional matrix adjust. Identities = 151/242 (62%), Positives = 191/242 (78%) Query: 2 EPMISVRHLHKSFGAHKVLTDINVDIHAREVVVVIGPSGSGKSTFLRCLNLLEQPQEGDI 61 E +I +++LHK FG ++VL +++ I EVVV+IGPSGSGKSTFLR +NLLE+P +G + Sbjct: 3 EYLIEIKNLHKYFGKNEVLKGLDIQIKKGEVVVMIGPSGSGKSTFLRTMNLLEKPTDGQV 62 Query: 62 MIEGTSLMAKSTRINDIRTELGMVFQQFNLFPHKKVIENIMLAPVRVRKWPAEQARRKAL 121 EG ++ KS + R ++GMVFQQFNLFP+ V+EN+ LAPV+ K E+A++ A Sbjct: 63 YFEGVNIADKSVDVFKHREKMGMVFQQFNLFPNMTVLENLCLAPVKTGKMTKEEAKKTAE 122 Query: 122 ELLDKVGLSEKAEAYPASLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLAV 181 +LL +VGLS+KAEAYP +LSGGQ QRVAIARALAM P +MLFDEPTSALDPEMVGEVLAV Sbjct: 123 DLLQRVGLSDKAEAYPQALSGGQQQRVAIARALAMNPDVMLFDEPTSALDPEMVGEVLAV 182 Query: 182 MKELAREGMTMVVVTHEMGFAREVGDRVLFMEQGAVVEEGHPEQLFSHPSHERTRAFLSK 241 M+ELA+EGMTMVVVTHEMGFA+ V DRVLFM G +VE+G P Q+F P +RT+ FL+K Sbjct: 183 MQELAKEGMTMVVVTHEMGFAKTVADRVLFMADGTIVEQGKPAQVFDSPKEKRTQDFLAK 242 Query: 242 VL 243 VL Sbjct: 243 VL 244 >SPy1506 [E] COG1126 ABC-type polar amino acid transport system, ATPase component Length = 244 Score = 317 bits (813), Expect = 8e-87, Method: Compositional matrix adjust. Identities = 150/242 (61%), Positives = 189/242 (78%) Query: 2 EPMISVRHLHKSFGAHKVLTDINVDIHAREVVVVIGPSGSGKSTFLRCLNLLEQPQEGDI 61 E +IS++ LHK +G ++VL I++DI EVVV+IGPSGSGKST LR +NLLE P +G I Sbjct: 3 EAIISIKDLHKYYGHNEVLKGIDLDIMPGEVVVIIGPSGSGKSTLLRTMNLLEVPTKGQI 62 Query: 62 MIEGTSLMAKSTRINDIRTELGMVFQQFNLFPHKKVIENIMLAPVRVRKWPAEQARRKAL 121 EG + K I +R ++GMVFQQFNLFP+ ++ENI L+P++ + +A + AL Sbjct: 63 RFEGIDITDKKNDIFSMREKMGMVFQQFNLFPNMTILENITLSPIKTKGMAKAEADKTAL 122 Query: 122 ELLDKVGLSEKAEAYPASLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLAV 181 LLDKVGLSEKA+AYPASLSGGQ QR+AIAR LAM+P ++LFDEPTSALDPEMVGEVLAV Sbjct: 123 SLLDKVGLSEKAKAYPASLSGGQQQRIAIARGLAMDPDVLLFDEPTSALDPEMVGEVLAV 182 Query: 182 MKELAREGMTMVVVTHEMGFAREVGDRVLFMEQGAVVEEGHPEQLFSHPSHERTRAFLSK 241 M++LA+ GMTMV+VTHEMGFA+EV DRV+FM+ G +VEEG P QLF ERT+ FLS+ Sbjct: 183 MQDLAKSGMTMVIVTHEMGFAKEVADRVMFMDGGVIVEEGSPNQLFDLTKEERTKDFLSR 242 Query: 242 VL 243 VL Sbjct: 243 VL 244 >CAC0112 [E] COG1126 ABC-type polar amino acid transport system, ATPase component Length = 245 Score = 317 bits (813), Expect = 9e-87, Method: Compositional matrix adjust. Identities = 147/239 (61%), Positives = 185/239 (77%) Query: 5 ISVRHLHKSFGAHKVLTDINVDIHAREVVVVIGPSGSGKSTFLRCLNLLEQPQEGDIMIE 64 I V+ L KS+G+++VL +IN+ I EVV +IGPSGSGKST LRC+N LE+ G +MI+ Sbjct: 7 IEVKELKKSYGSNEVLKEINLTIDRSEVVCIIGPSGSGKSTLLRCMNRLEEITAGQLMID 66 Query: 65 GTSLMAKSTRINDIRTELGMVFQQFNLFPHKKVIENIMLAPVRVRKWPAEQARRKALELL 124 G + K+ I+ +R +GMVFQ FNLFPH V++NI AP+ + K E+A + A +LL Sbjct: 67 GKDISDKNINIDKLRENVGMVFQHFNLFPHLSVLKNITFAPIELNKMSKEEAEKTAFKLL 126 Query: 125 DKVGLSEKAEAYPASLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLAVMKE 184 DKVGL++KA YP LSGGQ QRVAIARALAM P IMLFDEPTSALDPEMVGEVL VMK+ Sbjct: 127 DKVGLNDKANTYPDKLSGGQKQRVAIARALAMNPDIMLFDEPTSALDPEMVGEVLGVMKD 186 Query: 185 LAREGMTMVVVTHEMGFAREVGDRVLFMEQGAVVEEGHPEQLFSHPSHERTRAFLSKVL 243 LA+EGMTMVVVTHEMGFAREV DRV+FM G +VE+G P+ +F +P+ +RT+ FL+KVL Sbjct: 187 LAKEGMTMVVVTHEMGFAREVADRVIFMADGYIVEQGTPDDIFKNPTQDRTKDFLNKVL 245 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.134 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 16,612,546 Number of extensions: 630058 Number of successful extensions: 9293 Number of sequences better than 1.0e-05: 2212 Number of HSP's gapped: 5208 Number of HSP's successfully gapped: 2491 Length of query: 243 Length of database: 38,378,431 Length adjustment: 103 Effective length of query: 140 Effective length of database: 26,499,029 Effective search space: 3709864060 Effective search space used: 3709864060 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 114 (48.5 bits)