BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0459.0027.p (198 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC1414 [T] COG2310 Uncharacterized proteins involved in stress ... 216 2e-56 BS_yceC [T] COG2310 Uncharacterized proteins involved in stress ... 207 7e-54 BS_yceD [T] COG2310 Uncharacterized proteins involved in stress ... 172 3e-43 YPO0299 [T] COG2310 Uncharacterized proteins involved in stress ... 165 4e-41 YPO0298 [T] COG2310 Uncharacterized proteins involved in stress ... 161 5e-40 >CAC1414 [T] COG2310 Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1 Length = 201 Score = 216 bits (549), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 110/200 (55%), Positives = 144/200 (72%), Gaps = 8/200 (4%) Query: 4 INLVKGQKIDLTKGNAGLSNVIVGLGWDPAEPAR--GF----FGVKKQANIDCDASALLL 57 INL KGQ+I+LTKG LS + VGLGWDP +R GF FGVK Q+ IDCDAS L+L Sbjct: 3 INLQKGQRINLTKGGQTLSKLTVGLGWDPISKSRKSGFLSSIFGVK-QSEIDCDASVLML 61 Query: 58 SENGKLTNKLNLVCFHNKQNANSSVVHSGDNLTGEGDGDDEQIKVNLKAIPADVHKVLVV 117 +E+ KL N N+V F N ++ SV+H+GDNLTGEG+GDDE I V L +P+++HK++ Sbjct: 62 NEDYKLENN-NVVYFGNLRSRCESVIHTGDNLTGEGNGDDEVIYVTLDKVPSNIHKLVFA 120 Query: 118 VNIYDAVNRKQDFGMIKSAYIRIVNASGNSELVKFNLTDNYTGFTALICGELYRHGEEWK 177 VNIYD +NR+QDFGMIK+AYIR+VN+S N ELV++NLTD+Y+G T +I GE+YR+G EWK Sbjct: 121 VNIYDCINRRQDFGMIKNAYIRVVNSSNNEELVRYNLTDDYSGKTTVIVGEIYRNGSEWK 180 Query: 178 FXXXXXXXXXXXXNQLAERY 197 F N ++ RY Sbjct: 181 FAAIGEGTNDTNLNLISRRY 200 >BS_yceC [T] COG2310 Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1 Length = 199 Score = 207 bits (527), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 103/198 (52%), Positives = 134/198 (67%), Gaps = 4/198 (2%) Query: 4 INLVKGQKIDLTKGNAGLSNVIVGLGWDPAEPARGFFGV---KKQANIDCDASALLLSEN 60 I+L KGQ+IDLTKG AGLS ++VGLGWDP GFF NIDCDAS L+L EN Sbjct: 3 ISLEKGQRIDLTKGKAGLSKLMVGLGWDPVSSGGGFFSKLLGGGGPNIDCDASVLML-EN 61 Query: 61 GKLTNKLNLVCFHNKQNANSSVVHSGDNLTGEGDGDDEQIKVNLKAIPADVHKVLVVVNI 120 GK T+K NL+ F N ++ V H+GDNLTG+G GDDEQI ++L +P ++ K++ VVNI Sbjct: 62 GKFTDKKNLIYFGNLKSRCGGVQHTGDNLTGDGAGDDEQIMIDLDKVPGNIDKLVFVVNI 121 Query: 121 YDAVNRKQDFGMIKSAYIRIVNASGNSELVKFNLTDNYTGFTALICGELYRHGEEWKFXX 180 YD V RKQDFGMI++A+IR+V+ S + E++K+NL DNY G T+LI E+YR G EWKF Sbjct: 122 YDCVRRKQDFGMIQNAFIRVVDQSNHEEMLKYNLRDNYAGRTSLITAEIYRSGSEWKFAA 181 Query: 181 XXXXXXXXXXNQLAERYI 198 + RY+ Sbjct: 182 VGEGTNDTRLEDIISRYV 199 >BS_yceD [T] COG2310 Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1 Length = 173 Score = 172 bits (436), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 10/175 (5%), Positives = 22/175 (12%), Gaps = 7/175 (4%) Query: 4 INLVKGQKIDLTKGNAGLSNVIVGLGWDPAEPARGFFGVKKQANIDCDASALLLSENGKL 63 + + L + A +S Sbjct: 3 KVKLPLTLDPVRTAQKRLDYQGIYTPDQVERVAESV-------VSVDSDVECSMSFAIDN 55 Query: 64 TNKLNLVCFHNKQNANSSVVHSGDNLTGEGDGDDEQIKVNLKAIPADVHKVLVVVNIYDA 123 L + + A + Sbjct: 56 QRLAVLNGDAKVTVTLECQRCGKPFTHQVYTTYCFSPVRSDEQAEALPEAYEPIEVNEFG 115 Query: 124 VNRKQDFGMIKSAYIRIVNASGNSELVKFNLTDNYTGFTALICGELYRHGEEWKF 178 + V +SE + + D G + Sbjct: 116 EIDLLAMVEDEIILALPVVPVHDSEHCEVSEADMVFGELPEEAQKPNPFAVLASL 170 >YPO0299 [T] COG2310 Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1 Length = 191 Score = 165 bits (418), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 81/175 (46%), Positives = 120/175 (68%), Gaps = 8/175 (4%) Query: 4 INLVKGQKIDLTKGNAGLSNVIVGLGWDPAEPARGFFGVKKQANIDCDASALLLSENGKL 63 ++LVKG + LTK ++ +VGLGWD AR V + D DAS ++ ENGK+ Sbjct: 3 VSLVKGGNVSLTKEAPTMNIAVVGLGWD----AR----VTDGSEFDLDASVFMVGENGKV 54 Query: 64 TNKLNLVCFHNKQNANSSVVHSGDNLTGEGDGDDEQIKVNLKAIPADVHKVLVVVNIYDA 123 + + + F+NK + SVVH GDN TG GDGDDEQIK++LK +PADV K++ V IYDA Sbjct: 55 LSDQHFIFFNNKVSPCGSVVHQGDNRTGAGDGDDEQIKIDLKKVPADVKKIIFSVTIYDA 114 Query: 124 VNRKQDFGMIKSAYIRIVNASGNSELVKFNLTDNYTGFTALICGELYRHGEEWKF 178 RKQ+FGM+ ++++R+VN ++E+ +F+L+++ + TA+I GELYR+ +EWKF Sbjct: 115 EARKQNFGMVSNSFMRVVNEDNSAEIARFDLSEDASTETAMIFGELYRNNDEWKF 169 >YPO0298 [T] COG2310 Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1 Length = 192 Score = 161 bits (408), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 78/176 (44%), Positives = 120/176 (68%), Gaps = 8/176 (4%) Query: 3 GINLVKGQKIDLTKGNAGLSNVIVGLGWDPAEPARGFFGVKKQANIDCDASALLLSENGK 62 G++L KG + L+K ++NV++GLGWD AR G + D DASA LL+ NGK Sbjct: 2 GVSLSKGGNVSLSKEAPTMTNVLIGLGWD----ARSTDG----QDFDLDASAFLLTANGK 53 Query: 63 LTNKLNLVCFHNKQNANSSVVHSGDNLTGEGDGDDEQIKVNLKAIPADVHKVLVVVNIYD 122 + N + + ++N ++++ SV+H+GDN TGEG+GDDE +K+ L IPADV K++ VV I+D Sbjct: 54 VRNDADFIFYNNLKSSDGSVMHTGDNRTGEGEGDDESLKIKLPLIPADVDKIVFVVTIHD 113 Query: 123 AVNRKQDFGMIKSAYIRIVNASGNSELVKFNLTDNYTGFTALICGELYRHGEEWKF 178 A R+Q FG + +A+IR+VN E+ +++L+++ + TA++ GELYRH EWKF Sbjct: 114 AQARRQSFGQVANAFIRLVNDDNGVEIARYDLSEDASTETAMLFGELYRHNAEWKF 169 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.317 0.136 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 13,843,808 Number of extensions: 536225 Number of successful extensions: 887 Number of sequences better than 1.0e-05: 22 Number of HSP's gapped: 854 Number of HSP's successfully gapped: 22 Length of query: 198 Length of database: 38,378,431 Length adjustment: 101 Effective length of query: 97 Effective length of database: 26,729,697 Effective search space: 2592780609 Effective search space used: 2592780609 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 113 (48.1 bits)