BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0459.0024.p (434 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ZterA.2_2 [R] COG4110 Uncharacterized protein involved in stress... 176 6e-44 ZterA_2 [R] COG4110 Uncharacterized protein involved in stress r... 176 6e-44 BS_yceE [T] COG2310 Uncharacterized proteins involved in stress ... 169 1e-41 BS_yceD [T] COG2310 Uncharacterized proteins involved in stress ... 157 3e-38 CAC1412 [T] COG2310 Uncharacterized proteins involved in stress ... 155 1e-37 >ZterA.2_2 [R] COG4110 Uncharacterized protein involved in stress response Length = 223 Score = 176 bits (446), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 91/180 (50%), Positives = 117/180 (65%), Gaps = 6/180 (3%) Query: 259 LGEVLVNLNWNQ---KQG-GGLFSRKGGVDLDLACLYELKNGQKGVVQALGNAFGHFQQP 314 GE+ +NLNW++ K G G+F KG +DLDL EL++G K V+QALGNAFG ++ Sbjct: 46 FGEIRINLNWHRGSSKSGFAGMFGSKG-IDLDLGAFVELQDGYKSVIQALGNAFGDYRDE 104 Query: 315 PFVMLDGDDRTGSVTSGENLRINGSKVAEIQRILIFAFIYKGVTHWSEADGVVTITQGGG 374 P+V L GDDRTG V+ GE L ING + I+ +LI+AFIY+GV W + DGVVTI Sbjct: 105 PYVQLKGDDRTGDVSDGEWLHINGREWKHIREVLIYAFIYEGVPSWDKTDGVVTIHVPDQ 164 Query: 375 PDIIVHLDEHNNRKGMCAIAMVQNVGNETFSIERLVQYFSGHREMDQAYGWGLHWVAGSK 434 P I L E NR+ +CAIA + N N +ER+ QYF G EMD+A+GWG W AGSK Sbjct: 165 PPIETRLTEGENRRTLCAIARLVNE-NGAIKVERINQYFKGQDEMDRAFGWGFRWSAGSK 223 >ZterA_2 [R] COG4110 Uncharacterized protein involved in stress response Length = 223 Score = 176 bits (446), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 91/180 (50%), Positives = 117/180 (65%), Gaps = 6/180 (3%) Query: 259 LGEVLVNLNWNQ---KQG-GGLFSRKGGVDLDLACLYELKNGQKGVVQALGNAFGHFQQP 314 GE+ +NLNW++ K G G+F KG +DLDL EL++G K V+QALGNAFG ++ Sbjct: 46 FGEIRINLNWHRGSSKSGFAGMFGSKG-IDLDLGAFVELQDGYKSVIQALGNAFGDYRDE 104 Query: 315 PFVMLDGDDRTGSVTSGENLRINGSKVAEIQRILIFAFIYKGVTHWSEADGVVTITQGGG 374 P+V L GDDRTG V+ GE L ING + I+ +LI+AFIY+GV W + DGVVTI Sbjct: 105 PYVQLKGDDRTGDVSDGEWLHINGREWKHIREVLIYAFIYEGVPSWDKTDGVVTIHVPDQ 164 Query: 375 PDIIVHLDEHNNRKGMCAIAMVQNVGNETFSIERLVQYFSGHREMDQAYGWGLHWVAGSK 434 P I L E NR+ +CAIA + N N +ER+ QYF G EMD+A+GWG W AGSK Sbjct: 165 PPIETRLTEGENRRTLCAIARLVNE-NGAIKVERINQYFKGQDEMDRAFGWGFRWSAGSK 223 >BS_yceE [T] COG2310 Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1 Length = 408 Score = 169 bits (427), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 13/192 (6%), Positives = 30/192 (15%), Gaps = 9/192 (4%) Query: 1 MSTQVVKGQKADLTKGNPGLQRMIAEIAWHAPS-----SMEIDASAFLLGSEGKVRGDND 55 MS A + + G Sbjct: 1 MSPCENDTPINWKRNLIVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGIVF 60 Query: 56 LIFYNN---PSTSYIRYKD-VPGQASGGLRQFEIELDKIPPDIMRIALTLTLYDGDNRKQ 111 I + S + D + + + + + + + Sbjct: 61 SITFLFSAIASPFWGGLADRKGRKLMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLL 120 Query: 112 SFGQMSEAHCRILNQATGSEILRCNLGSQFSVETAVVVGELYRYSGEWKFSAIVAGFDGG 171 + S V A++ + V Sbjct: 121 GGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPMAGGLLADSYGLRPVFFITAS 180 Query: 172 LQALCSNYGIEV 183 + LC + Sbjct: 181 VLILCFFVTLFC 192 >BS_yceD [T] COG2310 Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1 Length = 173 Score = 157 bits (397), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 0/192 (0%), Positives = 0/192 (0%), Gaps = 9/192 (4%) Query: 1 MSTQVVKGQKADLTKGNPGLQRMIAEIAWHAPS-----SMEIDASAFLLGSEGKVRGDND 55 M + + L + + Sbjct: 1 MQKVKLPLTLDPVRTAQKRLDYQGIYTPDQVERVAESVVSVDSDVECSMSFAIDNQRLAV 60 Query: 56 LIFYNN---PSTSYIRYKD-VPGQASGGLRQFEIELDKIPPDIMRIALTLTLYDGDNRKQ 111 L K + ++ G+ Sbjct: 61 LNGDAKVTVTLECQRCGKPFTHQVYTTYCFSPVRSDEQAEALPEAYEPIEVNEFGEIDLL 120 Query: 112 SFGQMSEAHCRILNQATGSEILRCNLGSQFSVETAVVVGELYRYSGEWKFSAIVAGFDGG 171 Sbjct: 121 180 Query: 172 LQALCSNYGIEV 183 Sbjct: 181 192 >CAC1412 [T] COG2310 Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1 Length = 191 Score = 155 bits (392), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 82/190 (43%), Positives = 118/190 (62%), Gaps = 10/190 (5%) Query: 1 MSTQVVKGQKADLTKGNPGLQRMIAEIAWHAPS-----SMEIDASAFLLGSEGKVRGDND 55 M+ + KGQK +L+K L++++ + W ++DAS F G +GK D D Sbjct: 1 MAIILTKGQKINLSKEGI-LKKILVGLGWDTNKYDGGYDFDLDASVFCCGEDGKAHKDTD 59 Query: 56 LIFYNN---PSTSYIRYKD-VPGQASGGLRQFEIELDKIPPDIMRIALTLTLYDGDNRKQ 111 +FYNN PS + D + G G Q I+L+K+P +I +IA ++T+YD + RKQ Sbjct: 60 FVFYNNLKHPSGAIEHLGDNLTGGGEGDDEQVVIDLEKVPEEIQKIAFSVTIYDPEVRKQ 119 Query: 112 SFGQMSEAHCRILNQATGSEILRCNLGSQFSVETAVVVGELYRYSGEWKFSAIVAGFDGG 171 +FGQ+S A RI+N E++R +LG FS+ETAVVV ELYR +G+WKF+AI +GF GG Sbjct: 120 NFGQVSNAFVRIVNSDNNEELVRYDLGEDFSIETAVVVAELYRNNGDWKFNAIGSGFQGG 179 Query: 172 LQALCSNYGI 181 L ALC NYG+ Sbjct: 180 LAALCKNYGL 189 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.316 0.135 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 31,525,983 Number of extensions: 1327530 Number of successful extensions: 4323 Number of sequences better than 1.0e-05: 32 Number of HSP's gapped: 4283 Number of HSP's successfully gapped: 32 Length of query: 434 Length of database: 38,378,431 Length adjustment: 109 Effective length of query: 325 Effective length of database: 25,807,025 Effective search space: 8387283125 Effective search space used: 8387283125 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 117 (49.7 bits)